miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 3' -55.4 NC_005263.2 + 44329 1.07 0.001268
Target:  5'- uCGCAAAGGCCGACCAGAACGCGACGUc -3'
miRNA:   3'- -GCGUUUCCGGCUGGUCUUGCGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 8386 0.81 0.086948
Target:  5'- gCGCAGgcAGGCCGACCAGGaaGCGCGcCGc -3'
miRNA:   3'- -GCGUU--UCCGGCUGGUCU--UGCGCuGCa -5'
24118 3' -55.4 NC_005263.2 + 26647 0.79 0.118952
Target:  5'- uCGCGAaguucGGGCCGuuCCAGAuacGCGCGACGg -3'
miRNA:   3'- -GCGUU-----UCCGGCu-GGUCU---UGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 38408 0.78 0.140751
Target:  5'- cCGCAgcGGUCGAgCAGGcaaaGCGCGACGUg -3'
miRNA:   3'- -GCGUuuCCGGCUgGUCU----UGCGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 478 0.78 0.148384
Target:  5'- uGCAAAGGCCG-CCAGGACGaugagcaggaugcCGAUGUa -3'
miRNA:   3'- gCGUUUCCGGCuGGUCUUGC-------------GCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 43081 0.76 0.180342
Target:  5'- cCGCc-GGGCCGGCUgucGAGCGCGGCGg -3'
miRNA:   3'- -GCGuuUCCGGCUGGu--CUUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 39118 0.76 0.190388
Target:  5'- aCGUGGuGGCCGGCCAGAucaACGuCGGCGg -3'
miRNA:   3'- -GCGUUuCCGGCUGGUCU---UGC-GCUGCa -5'
24118 3' -55.4 NC_005263.2 + 44668 0.74 0.248236
Target:  5'- aCGCGcAGGUCaACCAGGuCGCGACGg -3'
miRNA:   3'- -GCGUuUCCGGcUGGUCUuGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 25880 0.74 0.254758
Target:  5'- uCGCAAccGGGCCGacGCCGGcgacggcCGCGACGUa -3'
miRNA:   3'- -GCGUU--UCCGGC--UGGUCuu-----GCGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 22152 0.74 0.275171
Target:  5'- gCGCuguGGUCGaACCAGAccgACGUGACGUa -3'
miRNA:   3'- -GCGuuuCCGGC-UGGUCU---UGCGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 8856 0.73 0.289494
Target:  5'- gCGCAGcucGGCCGACgGGAuACGCGGCc- -3'
miRNA:   3'- -GCGUUu--CCGGCUGgUCU-UGCGCUGca -5'
24118 3' -55.4 NC_005263.2 + 35966 0.73 0.304395
Target:  5'- uGCAAGGcGCuCGACCgccuGGAGCGCG-CGUa -3'
miRNA:   3'- gCGUUUC-CG-GCUGG----UCUUGCGCuGCA- -5'
24118 3' -55.4 NC_005263.2 + 22742 0.72 0.319879
Target:  5'- gCGCAccgaucAGGCCG-CCgaGGAACGCGAUGg -3'
miRNA:   3'- -GCGUu-----UCCGGCuGG--UCUUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 19786 0.72 0.327839
Target:  5'- gGCucggcGGCCGACCAGAuucGCGCcGCGa -3'
miRNA:   3'- gCGuuu--CCGGCUGGUCU---UGCGcUGCa -5'
24118 3' -55.4 NC_005263.2 + 45899 0.72 0.335945
Target:  5'- gCGCAGGGGCgaaaGACCAGAuguGgGCGACc- -3'
miRNA:   3'- -GCGUUUCCGg---CUGGUCU---UgCGCUGca -5'
24118 3' -55.4 NC_005263.2 + 27348 0.72 0.344196
Target:  5'- gCGCGGccauguuacAGGCCG-CCAGcgagcGGCGCGGCGg -3'
miRNA:   3'- -GCGUU---------UCCGGCuGGUC-----UUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 42332 0.72 0.344196
Target:  5'- cCGCAAGGuGCCGACCGaAGCGUaucGCGUg -3'
miRNA:   3'- -GCGUUUC-CGGCUGGUcUUGCGc--UGCA- -5'
24118 3' -55.4 NC_005263.2 + 26241 0.72 0.344196
Target:  5'- aGCGucuuGCCGGCCGucgcGAACGCGGCGa -3'
miRNA:   3'- gCGUuuc-CGGCUGGU----CUUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 33951 0.72 0.360272
Target:  5'- gGCGAcaacugcGGGCCGGCgAGugUGCGGCGa -3'
miRNA:   3'- gCGUU-------UCCGGCUGgUCuuGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 10389 0.71 0.369815
Target:  5'- aCGCGccGGGCCGGCCGGcgagcggguccGGCGCG-CGUu -3'
miRNA:   3'- -GCGUu-UCCGGCUGGUC-----------UUGCGCuGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.