miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 3' -55.4 NC_005263.2 + 478 0.78 0.148384
Target:  5'- uGCAAAGGCCG-CCAGGACGaugagcaggaugcCGAUGUa -3'
miRNA:   3'- gCGUUUCCGGCuGGUCUUGC-------------GCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 650 0.68 0.580424
Target:  5'- aCGCGAcGuGCCGGCCAGAucgaACGCcucauCGUa -3'
miRNA:   3'- -GCGUUuC-CGGCUGGUCU----UGCGcu---GCA- -5'
24118 3' -55.4 NC_005263.2 + 856 0.68 0.546688
Target:  5'- gCGCGGAcagcguacccgucGuGCCGGCCGGcgcuucguucAGCGCGGCGg -3'
miRNA:   3'- -GCGUUU-------------C-CGGCUGGUC----------UUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 1239 0.67 0.591407
Target:  5'- gCGCGAugucauCCGGCCAGGAUGCG-CGa -3'
miRNA:   3'- -GCGUUucc---GGCUGGUCUUGCGCuGCa -5'
24118 3' -55.4 NC_005263.2 + 2601 0.69 0.484439
Target:  5'- uCGUGAAGGUCGcCCAauuGCGCGACa- -3'
miRNA:   3'- -GCGUUUCCGGCuGGUcu-UGCGCUGca -5'
24118 3' -55.4 NC_005263.2 + 3193 0.66 0.65771
Target:  5'- aGCAcGAGGCCGgugaGCCGGcccGGCGCGcCGc -3'
miRNA:   3'- gCGU-UUCCGGC----UGGUC---UUGCGCuGCa -5'
24118 3' -55.4 NC_005263.2 + 3210 0.71 0.387605
Target:  5'- gCGCGGccaggaucGGGCCGACCucGGGCGaCGACa- -3'
miRNA:   3'- -GCGUU--------UCCGGCUGGu-CUUGC-GCUGca -5'
24118 3' -55.4 NC_005263.2 + 3732 0.67 0.635596
Target:  5'- gCGCAc--GCCgGGCCGGAucaGCGCGuACGUg -3'
miRNA:   3'- -GCGUuucCGG-CUGGUCU---UGCGC-UGCA- -5'
24118 3' -55.4 NC_005263.2 + 3930 0.68 0.580424
Target:  5'- gGCGGcAGGCCGACCGGcAgGuUGGCGc -3'
miRNA:   3'- gCGUU-UCCGGCUGGUCuUgC-GCUGCa -5'
24118 3' -55.4 NC_005263.2 + 4084 0.67 0.613469
Target:  5'- gGCGAAGucgccacccuuGCCGAgCGGA-CGCGACa- -3'
miRNA:   3'- gCGUUUC-----------CGGCUgGUCUuGCGCUGca -5'
24118 3' -55.4 NC_005263.2 + 6965 0.71 0.37864
Target:  5'- gCGCGAAcGCCGGuuuCCGGAucuCGCGGCGa -3'
miRNA:   3'- -GCGUUUcCGGCU---GGUCUu--GCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 8386 0.81 0.086948
Target:  5'- gCGCAGgcAGGCCGACCAGGaaGCGCGcCGc -3'
miRNA:   3'- -GCGUU--UCCGGCUGGUCU--UGCGCuGCa -5'
24118 3' -55.4 NC_005263.2 + 8856 0.73 0.289494
Target:  5'- gCGCAGcucGGCCGACgGGAuACGCGGCc- -3'
miRNA:   3'- -GCGUUu--CCGGCUGgUCU-UGCGCUGca -5'
24118 3' -55.4 NC_005263.2 + 8962 0.66 0.679728
Target:  5'- aGCAAcgucGCCGACaCGGuGCGcCGACGUu -3'
miRNA:   3'- gCGUUuc--CGGCUG-GUCuUGC-GCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 9435 0.67 0.634489
Target:  5'- cCGCccGGGCCGAUCAagacgggcaccacGGGCaGCGGCGc -3'
miRNA:   3'- -GCGuuUCCGGCUGGU-------------CUUG-CGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 9555 0.66 0.65771
Target:  5'- uCGCAcAGGUCGACaaAGAACGUGuccaggcgcuGCGUg -3'
miRNA:   3'- -GCGUuUCCGGCUGg-UCUUGCGC----------UGCA- -5'
24118 3' -55.4 NC_005263.2 + 10389 0.71 0.369815
Target:  5'- aCGCGccGGGCCGGCCGGcgagcggguccGGCGCG-CGUu -3'
miRNA:   3'- -GCGUu-UCCGGCUGGUC-----------UUGCGCuGCA- -5'
24118 3' -55.4 NC_005263.2 + 10498 0.68 0.547767
Target:  5'- cCGCGAcGGCUGAuaaaCCAGcGCGuCGGCGa -3'
miRNA:   3'- -GCGUUuCCGGCU----GGUCuUGC-GCUGCa -5'
24118 3' -55.4 NC_005263.2 + 10548 0.69 0.505192
Target:  5'- uGCGcGGGUuguCGGCCGucuGCGCGACGUg -3'
miRNA:   3'- gCGUuUCCG---GCUGGUcu-UGCGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 12724 0.66 0.701563
Target:  5'- aGCAAAGGCgGcgcuaACUGGcACuGCGACGUc -3'
miRNA:   3'- gCGUUUCCGgC-----UGGUCuUG-CGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.