miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 3' -55.4 NC_005263.2 + 14033 0.66 0.690674
Target:  5'- gGCGAcGGuUCGGCCAcGGGCGCcGCGUc -3'
miRNA:   3'- gCGUUuCC-GGCUGGU-CUUGCGcUGCA- -5'
24118 3' -55.4 NC_005263.2 + 14161 0.68 0.537005
Target:  5'- gGCGAcuucGGGCCGgcgGCCGGuguGCGCGagcuGCGUg -3'
miRNA:   3'- gCGUU----UCCGGC---UGGUCu--UGCGC----UGCA- -5'
24118 3' -55.4 NC_005263.2 + 14413 0.71 0.369815
Target:  5'- aCGCAAuuGuUCGACCAGAcccAUGCGACGg -3'
miRNA:   3'- -GCGUUucC-GGCUGGUCU---UGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 14670 0.7 0.434462
Target:  5'- gCGCucguGGCCGACCGcuacgcGcGCGCGGCGc -3'
miRNA:   3'- -GCGuuu-CCGGCUGGU------CuUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 15327 0.71 0.405948
Target:  5'- gGCGcGGGCCGACaccgAGAaccccgACGCGGCGc -3'
miRNA:   3'- gCGUuUCCGGCUGg---UCU------UGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 15710 0.69 0.484439
Target:  5'- aGCGAcuacGGGCgguuCGACCA--GCGCGGCGUu -3'
miRNA:   3'- gCGUU----UCCG----GCUGGUcuUGCGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 16176 0.7 0.415322
Target:  5'- uCGUugauGAGGUCGACgAGGucCGCGACGa -3'
miRNA:   3'- -GCGu---UUCCGGCUGgUCUu-GCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 16574 0.68 0.580424
Target:  5'- aCGCcAAGGCCGGCgGcGACGCGuuCGc -3'
miRNA:   3'- -GCGuUUCCGGCUGgUcUUGCGCu-GCa -5'
24118 3' -55.4 NC_005263.2 + 18376 0.71 0.37864
Target:  5'- uCGCcaugAAAGGCa-GCCAGcGACGCGACGg -3'
miRNA:   3'- -GCG----UUUCCGgcUGGUC-UUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 19032 0.66 0.668736
Target:  5'- aGCGAcGGCCGAugcgcgccgccCCgAGGACGCGcCGc -3'
miRNA:   3'- gCGUUuCCGGCU-----------GG-UCUUGCGCuGCa -5'
24118 3' -55.4 NC_005263.2 + 19786 0.72 0.327839
Target:  5'- gGCucggcGGCCGACCAGAuucGCGCcGCGa -3'
miRNA:   3'- gCGuuu--CCGGCUGGUCU---UGCGcUGCa -5'
24118 3' -55.4 NC_005263.2 + 20293 0.66 0.645554
Target:  5'- cCGCGAAGGUgacgccgCGAUCAcGACGgCGAUGUa -3'
miRNA:   3'- -GCGUUUCCG-------GCUGGUcUUGC-GCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 21173 0.7 0.415322
Target:  5'- aCGCcacGGGGCCgGACgCGGAcgcGCGCGGCGc -3'
miRNA:   3'- -GCGu--UUCCGG-CUG-GUCU---UGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 21262 0.67 0.60684
Target:  5'- gCGCAGugcugcucuuggGGGCuCGGgCAGGucaugggcgccaacuACGCGACGUg -3'
miRNA:   3'- -GCGUU------------UCCG-GCUgGUCU---------------UGCGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 21842 0.7 0.424828
Target:  5'- gCGUucAGGCUGAUCAGGucgccgcguuCGCGACGg -3'
miRNA:   3'- -GCGuuUCCGGCUGGUCUu---------GCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 22152 0.74 0.275171
Target:  5'- gCGCuguGGUCGaACCAGAccgACGUGACGUa -3'
miRNA:   3'- -GCGuuuCCGGC-UGGUCU---UGCGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 22742 0.72 0.319879
Target:  5'- gCGCAccgaucAGGCCG-CCgaGGAACGCGAUGg -3'
miRNA:   3'- -GCGUu-----UCCGGCuGG--UCUUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 23126 0.66 0.64666
Target:  5'- uGCGGccAGGCCGGCCAGcauCGUGuugcCGa -3'
miRNA:   3'- gCGUU--UCCGGCUGGUCuu-GCGCu---GCa -5'
24118 3' -55.4 NC_005263.2 + 23378 0.66 0.65771
Target:  5'- uCGUGAAGGCUG-CCGcGAacaucGCGCGAUGc -3'
miRNA:   3'- -GCGUUUCCGGCuGGU-CU-----UGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 24021 0.66 0.690674
Target:  5'- aGCcGccGCCGGCCGGAuCGguCGACGUg -3'
miRNA:   3'- gCGuUucCGGCUGGUCUuGC--GCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.