Results 21 - 40 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24118 | 3' | -55.4 | NC_005263.2 | + | 45807 | 0.66 | 0.701563 |
Target: 5'- aCGCGGGcGuGCCGGCCAcGGCGC-ACGa -3' miRNA: 3'- -GCGUUU-C-CGGCUGGUcUUGCGcUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 4084 | 0.67 | 0.613469 |
Target: 5'- gGCGAAGucgccacccuuGCCGAgCGGA-CGCGACa- -3' miRNA: 3'- gCGUUUC-----------CGGCUgGUCUuGCGCUGca -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 3732 | 0.67 | 0.635596 |
Target: 5'- gCGCAc--GCCgGGCCGGAucaGCGCGuACGUg -3' miRNA: 3'- -GCGUuucCGG-CUGGUCU---UGCGC-UGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 21262 | 0.67 | 0.60684 |
Target: 5'- gCGCAGugcugcucuuggGGGCuCGGgCAGGucaugggcgccaacuACGCGACGUg -3' miRNA: 3'- -GCGUU------------UCCG-GCUgGUCU---------------UGCGCUGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 42793 | 0.67 | 0.613469 |
Target: 5'- gCGCGAAGGCgcgaaaGACCcGAACGCcgaguaagcgaGACGc -3' miRNA: 3'- -GCGUUUCCGg-----CUGGuCUUGCG-----------CUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 9435 | 0.67 | 0.634489 |
Target: 5'- cCGCccGGGCCGAUCAagacgggcaccacGGGCaGCGGCGc -3' miRNA: 3'- -GCGuuUCCGGCUGGU-------------CUUG-CGCUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 37970 | 0.67 | 0.624529 |
Target: 5'- cCGCGccGGCUGGCgCuGAAgGUGGCGg -3' miRNA: 3'- -GCGUuuCCGGCUG-GuCUUgCGCUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 29002 | 0.67 | 0.602425 |
Target: 5'- gGCGc-GGCCGACCGGcAGugcguugcgcacCGCGACGc -3' miRNA: 3'- gCGUuuCCGGCUGGUC-UU------------GCGCUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 33977 | 0.67 | 0.624529 |
Target: 5'- cCGCGcuGGCCGcugcgGCUAcGAuCGCGACGg -3' miRNA: 3'- -GCGUuuCCGGC-----UGGU-CUuGCGCUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 35452 | 0.67 | 0.591407 |
Target: 5'- gCGCGccGGCCGACgAcGAuauCGaCGGCGUg -3' miRNA: 3'- -GCGUuuCCGGCUGgU-CUu--GC-GCUGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 1239 | 0.67 | 0.591407 |
Target: 5'- gCGCGAugucauCCGGCCAGGAUGCG-CGa -3' miRNA: 3'- -GCGUUucc---GGCUGGUCUUGCGCuGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 3930 | 0.68 | 0.580424 |
Target: 5'- gGCGGcAGGCCGACCGGcAgGuUGGCGc -3' miRNA: 3'- gCGUU-UCCGGCUGGUCuUgC-GCUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 47822 | 0.68 | 0.580424 |
Target: 5'- cCGCAGAcGUCGACCGuGAccgugcucggugGCGUGACGa -3' miRNA: 3'- -GCGUUUcCGGCUGGU-CU------------UGCGCUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 10498 | 0.68 | 0.547767 |
Target: 5'- cCGCGAcGGCUGAuaaaCCAGcGCGuCGGCGa -3' miRNA: 3'- -GCGUUuCCGGCU----GGUCuUGC-GCUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 14161 | 0.68 | 0.537005 |
Target: 5'- gGCGAcuucGGGCCGgcgGCCGGuguGCGCGagcuGCGUg -3' miRNA: 3'- gCGUU----UCCGGC---UGGUCu--UGCGC----UGCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 16574 | 0.68 | 0.580424 |
Target: 5'- aCGCcAAGGCCGGCgGcGACGCGuuCGc -3' miRNA: 3'- -GCGuUUCCGGCUGgUcUUGCGCu-GCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 650 | 0.68 | 0.580424 |
Target: 5'- aCGCGAcGuGCCGGCCAGAucgaACGCcucauCGUa -3' miRNA: 3'- -GCGUUuC-CGGCUGGUCU----UGCGcu---GCA- -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 43180 | 0.68 | 0.569484 |
Target: 5'- aCGCAGuacGGCgCGAUguuuUGGAugGCGACGg -3' miRNA: 3'- -GCGUUu--CCG-GCUG----GUCUugCGCUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 856 | 0.68 | 0.546688 |
Target: 5'- gCGCGGAcagcguacccgucGuGCCGGCCGGcgcuucguucAGCGCGGCGg -3' miRNA: 3'- -GCGUUU-------------C-CGGCUGGUC----------UUGCGCUGCa -5' |
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24118 | 3' | -55.4 | NC_005263.2 | + | 15710 | 0.69 | 0.484439 |
Target: 5'- aGCGAcuacGGGCgguuCGACCA--GCGCGGCGUu -3' miRNA: 3'- gCGUU----UCCG----GCUGGUcuUGCGCUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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