miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 3' -55.4 NC_005263.2 + 21173 0.7 0.415322
Target:  5'- aCGCcacGGGGCCgGACgCGGAcgcGCGCGGCGc -3'
miRNA:   3'- -GCGu--UUCCGG-CUG-GUCU---UGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 26241 0.72 0.344196
Target:  5'- aGCGucuuGCCGGCCGucgcGAACGCGGCGa -3'
miRNA:   3'- gCGUuuc-CGGCUGGU----CUUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 14033 0.66 0.690674
Target:  5'- gGCGAcGGuUCGGCCAcGGGCGCcGCGUc -3'
miRNA:   3'- gCGUUuCC-GGCUGGU-CUUGCGcUGCA- -5'
24118 3' -55.4 NC_005263.2 + 30620 0.66 0.64666
Target:  5'- aCGCGccGcGCgCGAUCAGGGCGUucauGACGUa -3'
miRNA:   3'- -GCGUuuC-CG-GCUGGUCUUGCG----CUGCA- -5'
24118 3' -55.4 NC_005263.2 + 33989 0.69 0.494766
Target:  5'- aGCGgcGAGGCCGGCCGuGuuggcugcguCGCGGCGc -3'
miRNA:   3'- gCGU--UUCCGGCUGGU-Cuu--------GCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 45899 0.72 0.335945
Target:  5'- gCGCAGGGGCgaaaGACCAGAuguGgGCGACc- -3'
miRNA:   3'- -GCGUUUCCGg---CUGGUCU---UgCGCUGca -5'
24118 3' -55.4 NC_005263.2 + 45257 0.66 0.64666
Target:  5'- gGCGGgcGGGCCGGCCcgcauucGAACG-GugGUg -3'
miRNA:   3'- gCGUU--UCCGGCUGGu------CUUGCgCugCA- -5'
24118 3' -55.4 NC_005263.2 + 22742 0.72 0.319879
Target:  5'- gCGCAccgaucAGGCCG-CCgaGGAACGCGAUGg -3'
miRNA:   3'- -GCGUu-----UCCGGCuGG--UCUUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 25880 0.74 0.254758
Target:  5'- uCGCAAccGGGCCGacGCCGGcgacggcCGCGACGUa -3'
miRNA:   3'- -GCGUU--UCCGGC--UGGUCuu-----GCGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 10548 0.69 0.505192
Target:  5'- uGCGcGGGUuguCGGCCGucuGCGCGACGUg -3'
miRNA:   3'- gCGUuUCCG---GCUGGUcu-UGCGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 30554 0.66 0.668736
Target:  5'- aCGCuGAGGGCaccaGACCGGAuuCGCGcACa- -3'
miRNA:   3'- -GCG-UUUCCGg---CUGGUCUu-GCGC-UGca -5'
24118 3' -55.4 NC_005263.2 + 6965 0.71 0.37864
Target:  5'- gCGCGAAcGCCGGuuuCCGGAucuCGCGGCGa -3'
miRNA:   3'- -GCGUUUcCGGCU---GGUCUu--GCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 42332 0.72 0.344196
Target:  5'- cCGCAAGGuGCCGACCGaAGCGUaucGCGUg -3'
miRNA:   3'- -GCGUUUC-CGGCUGGUcUUGCGc--UGCA- -5'
24118 3' -55.4 NC_005263.2 + 3732 0.67 0.635596
Target:  5'- gCGCAc--GCCgGGCCGGAucaGCGCGuACGUg -3'
miRNA:   3'- -GCGUuucCGG-CUGGUCU---UGCGC-UGCA- -5'
24118 3' -55.4 NC_005263.2 + 3193 0.66 0.65771
Target:  5'- aGCAcGAGGCCGgugaGCCGGcccGGCGCGcCGc -3'
miRNA:   3'- gCGU-UUCCGGC----UGGUC---UUGCGCuGCa -5'
24118 3' -55.4 NC_005263.2 + 24021 0.66 0.690674
Target:  5'- aGCcGccGCCGGCCGGAuCGguCGACGUg -3'
miRNA:   3'- gCGuUucCGGCUGGUCUuGC--GCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 35452 0.67 0.591407
Target:  5'- gCGCGccGGCCGACgAcGAuauCGaCGGCGUg -3'
miRNA:   3'- -GCGUuuCCGGCUGgU-CUu--GC-GCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 10389 0.71 0.369815
Target:  5'- aCGCGccGGGCCGGCCGGcgagcggguccGGCGCG-CGUu -3'
miRNA:   3'- -GCGUu-UCCGGCUGGUC-----------UUGCGCuGCA- -5'
24118 3' -55.4 NC_005263.2 + 3210 0.71 0.387605
Target:  5'- gCGCGGccaggaucGGGCCGACCucGGGCGaCGACa- -3'
miRNA:   3'- -GCGUU--------UCCGGCUGGu-CUUGC-GCUGca -5'
24118 3' -55.4 NC_005263.2 + 18376 0.71 0.37864
Target:  5'- uCGCcaugAAAGGCa-GCCAGcGACGCGACGg -3'
miRNA:   3'- -GCG----UUUCCGgcUGGUC-UUGCGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.