miRNA display CGI


Results 41 - 60 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 3' -55.4 NC_005263.2 + 33989 0.69 0.494766
Target:  5'- aGCGgcGAGGCCGGCCGuGuuggcugcguCGCGGCGc -3'
miRNA:   3'- gCGU--UUCCGGCUGGU-Cuu--------GCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 2601 0.69 0.484439
Target:  5'- uCGUGAAGGUCGcCCAauuGCGCGACa- -3'
miRNA:   3'- -GCGUUUCCGGCuGGUcu-UGCGCUGca -5'
24118 3' -55.4 NC_005263.2 + 15710 0.69 0.484439
Target:  5'- aGCGAcuacGGGCgguuCGACCA--GCGCGGCGUu -3'
miRNA:   3'- gCGUU----UCCG----GCUGGUcuUGCGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 27622 0.7 0.464103
Target:  5'- gCGCGAcGGUCGACCAcucauggccGAucgACGUGACGa -3'
miRNA:   3'- -GCGUUuCCGGCUGGU---------CU---UGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 33439 0.7 0.454103
Target:  5'- gCGUAgcGGUCGGCCAcGAGCGCuGGCa- -3'
miRNA:   3'- -GCGUuuCCGGCUGGU-CUUGCG-CUGca -5'
24118 3' -55.4 NC_005263.2 + 41332 0.7 0.444222
Target:  5'- gGCGAcuucgacgAGGCCGAgcucgcCCGGcGCGCGAUGg -3'
miRNA:   3'- gCGUU--------UCCGGCU------GGUCuUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 14670 0.7 0.434462
Target:  5'- gCGCucguGGCCGACCGcuacgcGcGCGCGGCGc -3'
miRNA:   3'- -GCGuuu-CCGGCUGGU------CuUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 21842 0.7 0.424828
Target:  5'- gCGUucAGGCUGAUCAGGucgccgcguuCGCGACGg -3'
miRNA:   3'- -GCGuuUCCGGCUGGUCUu---------GCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 37718 0.7 0.424828
Target:  5'- cCGCucgccGGCCGGcCCGGcGCGUGGCGg -3'
miRNA:   3'- -GCGuuu--CCGGCU-GGUCuUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 33135 0.7 0.424828
Target:  5'- gCGCAGAucgcuGCCGccaGCCAuGAGCGCGGCGc -3'
miRNA:   3'- -GCGUUUc----CGGC---UGGU-CUUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 16176 0.7 0.415322
Target:  5'- uCGUugauGAGGUCGACgAGGucCGCGACGa -3'
miRNA:   3'- -GCGu---UUCCGGCUGgUCUu-GCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 21173 0.7 0.415322
Target:  5'- aCGCcacGGGGCCgGACgCGGAcgcGCGCGGCGc -3'
miRNA:   3'- -GCGu--UUCCGG-CUG-GUCU---UGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 15327 0.71 0.405948
Target:  5'- gGCGcGGGCCGACaccgAGAaccccgACGCGGCGc -3'
miRNA:   3'- gCGUuUCCGGCUGg---UCU------UGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 32643 0.71 0.405018
Target:  5'- aGCAgcGGCCGAaagccuuCCGGAugGCG-CGg -3'
miRNA:   3'- gCGUuuCCGGCU-------GGUCUugCGCuGCa -5'
24118 3' -55.4 NC_005263.2 + 28638 0.71 0.387605
Target:  5'- uGCucGAGcGCCGugCGGAACGCcGCGa -3'
miRNA:   3'- gCGu-UUC-CGGCugGUCUUGCGcUGCa -5'
24118 3' -55.4 NC_005263.2 + 3210 0.71 0.387605
Target:  5'- gCGCGGccaggaucGGGCCGACCucGGGCGaCGACa- -3'
miRNA:   3'- -GCGUU--------UCCGGCUGGu-CUUGC-GCUGca -5'
24118 3' -55.4 NC_005263.2 + 18376 0.71 0.37864
Target:  5'- uCGCcaugAAAGGCa-GCCAGcGACGCGACGg -3'
miRNA:   3'- -GCG----UUUCCGgcUGGUC-UUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 6965 0.71 0.37864
Target:  5'- gCGCGAAcGCCGGuuuCCGGAucuCGCGGCGa -3'
miRNA:   3'- -GCGUUUcCGGCU---GGUCUu--GCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 14413 0.71 0.369815
Target:  5'- aCGCAAuuGuUCGACCAGAcccAUGCGACGg -3'
miRNA:   3'- -GCGUUucC-GGCUGGUCU---UGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 10389 0.71 0.369815
Target:  5'- aCGCGccGGGCCGGCCGGcgagcggguccGGCGCG-CGUu -3'
miRNA:   3'- -GCGUu-UCCGGCUGGUC-----------UUGCGCuGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.