miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 3' -55.4 NC_005263.2 + 20293 0.66 0.645554
Target:  5'- cCGCGAAGGUgacgccgCGAUCAcGACGgCGAUGUa -3'
miRNA:   3'- -GCGUUUCCG-------GCUGGUcUUGC-GCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 3732 0.67 0.635596
Target:  5'- gCGCAc--GCCgGGCCGGAucaGCGCGuACGUg -3'
miRNA:   3'- -GCGUuucCGG-CUGGUCU---UGCGC-UGCA- -5'
24118 3' -55.4 NC_005263.2 + 9435 0.67 0.634489
Target:  5'- cCGCccGGGCCGAUCAagacgggcaccacGGGCaGCGGCGc -3'
miRNA:   3'- -GCGuuUCCGGCUGGU-------------CUUG-CGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 33977 0.67 0.624529
Target:  5'- cCGCGcuGGCCGcugcgGCUAcGAuCGCGACGg -3'
miRNA:   3'- -GCGUuuCCGGC-----UGGU-CUuGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 37970 0.67 0.624529
Target:  5'- cCGCGccGGCUGGCgCuGAAgGUGGCGg -3'
miRNA:   3'- -GCGUuuCCGGCUG-GuCUUgCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 42793 0.67 0.613469
Target:  5'- gCGCGAAGGCgcgaaaGACCcGAACGCcgaguaagcgaGACGc -3'
miRNA:   3'- -GCGUUUCCGg-----CUGGuCUUGCG-----------CUGCa -5'
24118 3' -55.4 NC_005263.2 + 4084 0.67 0.613469
Target:  5'- gGCGAAGucgccacccuuGCCGAgCGGA-CGCGACa- -3'
miRNA:   3'- gCGUUUC-----------CGGCUgGUCUuGCGCUGca -5'
24118 3' -55.4 NC_005263.2 + 21262 0.67 0.60684
Target:  5'- gCGCAGugcugcucuuggGGGCuCGGgCAGGucaugggcgccaacuACGCGACGUg -3'
miRNA:   3'- -GCGUU------------UCCG-GCUgGUCU---------------UGCGCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 29002 0.67 0.602425
Target:  5'- gGCGc-GGCCGACCGGcAGugcguugcgcacCGCGACGc -3'
miRNA:   3'- gCGUuuCCGGCUGGUC-UU------------GCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 1239 0.67 0.591407
Target:  5'- gCGCGAugucauCCGGCCAGGAUGCG-CGa -3'
miRNA:   3'- -GCGUUucc---GGCUGGUCUUGCGCuGCa -5'
24118 3' -55.4 NC_005263.2 + 35452 0.67 0.591407
Target:  5'- gCGCGccGGCCGACgAcGAuauCGaCGGCGUg -3'
miRNA:   3'- -GCGUuuCCGGCUGgU-CUu--GC-GCUGCA- -5'
24118 3' -55.4 NC_005263.2 + 47822 0.68 0.580424
Target:  5'- cCGCAGAcGUCGACCGuGAccgugcucggugGCGUGACGa -3'
miRNA:   3'- -GCGUUUcCGGCUGGU-CU------------UGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 16574 0.68 0.580424
Target:  5'- aCGCcAAGGCCGGCgGcGACGCGuuCGc -3'
miRNA:   3'- -GCGuUUCCGGCUGgUcUUGCGCu-GCa -5'
24118 3' -55.4 NC_005263.2 + 3930 0.68 0.580424
Target:  5'- gGCGGcAGGCCGACCGGcAgGuUGGCGc -3'
miRNA:   3'- gCGUU-UCCGGCUGGUCuUgC-GCUGCa -5'
24118 3' -55.4 NC_005263.2 + 650 0.68 0.580424
Target:  5'- aCGCGAcGuGCCGGCCAGAucgaACGCcucauCGUa -3'
miRNA:   3'- -GCGUUuC-CGGCUGGUCU----UGCGcu---GCA- -5'
24118 3' -55.4 NC_005263.2 + 43180 0.68 0.569484
Target:  5'- aCGCAGuacGGCgCGAUguuuUGGAugGCGACGg -3'
miRNA:   3'- -GCGUUu--CCG-GCUG----GUCUugCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 10498 0.68 0.547767
Target:  5'- cCGCGAcGGCUGAuaaaCCAGcGCGuCGGCGa -3'
miRNA:   3'- -GCGUUuCCGGCU----GGUCuUGC-GCUGCa -5'
24118 3' -55.4 NC_005263.2 + 856 0.68 0.546688
Target:  5'- gCGCGGAcagcguacccgucGuGCCGGCCGGcgcuucguucAGCGCGGCGg -3'
miRNA:   3'- -GCGUUU-------------C-CGGCUGGUC----------UUGCGCUGCa -5'
24118 3' -55.4 NC_005263.2 + 14161 0.68 0.537005
Target:  5'- gGCGAcuucGGGCCGgcgGCCGGuguGCGCGagcuGCGUg -3'
miRNA:   3'- gCGUU----UCCGGC---UGGUCu--UGCGC----UGCA- -5'
24118 3' -55.4 NC_005263.2 + 10548 0.69 0.505192
Target:  5'- uGCGcGGGUuguCGGCCGucuGCGCGACGUg -3'
miRNA:   3'- gCGUuUCCG---GCUGGUcu-UGCGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.