miRNA display CGI


Results 61 - 80 of 121 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 10848 0.68 0.37266
Target:  5'- cGUugGUGCGgGCUacggcgucgcggcgGAaCuCGGCaCCGGCg -3'
miRNA:   3'- -CGugCAUGCgCGA--------------CUaG-GCCG-GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 18543 0.68 0.366723
Target:  5'- aGCGCGUucaagaaguuCGCGCagc-CCGGCaCCGGUg -3'
miRNA:   3'- -CGUGCAu---------GCGCGacuaGGCCG-GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 3320 0.68 0.366723
Target:  5'- cGCGCGguguucaacgucUGCGCGCcg--CCGGCgCCGcGCg -3'
miRNA:   3'- -CGUGC------------AUGCGCGacuaGGCCG-GGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 158 0.68 0.358355
Target:  5'- gGUGCGaGCaCGC-GAUCCGcGCCCGGg -3'
miRNA:   3'- -CGUGCaUGcGCGaCUAGGC-CGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 36451 0.68 0.358355
Target:  5'- -aACGU-CGCGCUGAUCC-GCUCGa- -3'
miRNA:   3'- cgUGCAuGCGCGACUAGGcCGGGCcg -5'
24118 5' -59.2 NC_005263.2 + 10382 0.68 0.358355
Target:  5'- aGC-CGccACGCGCcGggCCGGCC-GGCg -3'
miRNA:   3'- -CGuGCa-UGCGCGaCuaGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 30930 0.68 0.358355
Target:  5'- -gGCGUACGCGCgagcugcgcAUUCGGCUucuCGGCc -3'
miRNA:   3'- cgUGCAUGCGCGac-------UAGGCCGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 45779 0.69 0.353399
Target:  5'- cGCACGgugcuCGCGUUccgccaguucaacgcGGgcgugCCGGCCaCGGCg -3'
miRNA:   3'- -CGUGCau---GCGCGA---------------CUa----GGCCGG-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 29352 0.69 0.350122
Target:  5'- cCGgGUGCGCGagcagGcgCCGGuaaCCCGGCg -3'
miRNA:   3'- cGUgCAUGCGCga---CuaGGCC---GGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 35790 0.69 0.350122
Target:  5'- gGCGauUACGUGCUGGcgCC-GCUCGGCa -3'
miRNA:   3'- -CGUgcAUGCGCGACUa-GGcCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 30457 0.69 0.342024
Target:  5'- aGCGCGgcggccuuCGCGUUGcgccacAUCCGGCgccCUGGCg -3'
miRNA:   3'- -CGUGCau------GCGCGAC------UAGGCCG---GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 25772 0.69 0.341222
Target:  5'- -uGCGUcgagaagcagcccGCGCGCUGAgcgugCCGGCauaaaucaaaCGGCc -3'
miRNA:   3'- cgUGCA-------------UGCGCGACUa----GGCCGg---------GCCG- -5'
24118 5' -59.2 NC_005263.2 + 23610 0.69 0.341222
Target:  5'- -gACGUACGCGCc-GUUCGGCUuccgcacgaugaaCGGCg -3'
miRNA:   3'- cgUGCAUGCGCGacUAGGCCGG-------------GCCG- -5'
24118 5' -59.2 NC_005263.2 + 38231 0.69 0.334062
Target:  5'- aGCAUGaaaGCGCcgaggacaacgaGCUGaAUCCGGCC-GGCg -3'
miRNA:   3'- -CGUGCa--UGCG------------CGAC-UAGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 38177 0.69 0.334062
Target:  5'- uCGCGUuCGaCGCUGAUCCaGCUgccgaucuCGGCa -3'
miRNA:   3'- cGUGCAuGC-GCGACUAGGcCGG--------GCCG- -5'
24118 5' -59.2 NC_005263.2 + 18802 0.69 0.334062
Target:  5'- cGCGCGcgAUGCGCaug-CCGaCCCGGCc -3'
miRNA:   3'- -CGUGCa-UGCGCGacuaGGCcGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 30622 0.69 0.318549
Target:  5'- gGCAUGU-CGaggauGCUGcgCCGGCC-GGCg -3'
miRNA:   3'- -CGUGCAuGCg----CGACuaGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 1556 0.69 0.318549
Target:  5'- aGCACGUuCGUGUUGcgCaCGGUauagaCGGCa -3'
miRNA:   3'- -CGUGCAuGCGCGACuaG-GCCGg----GCCG- -5'
24118 5' -59.2 NC_005263.2 + 21713 0.69 0.310998
Target:  5'- gGUGCGUGCG-GCUGGaaUCCaaGGCUCGGg -3'
miRNA:   3'- -CGUGCAUGCgCGACU--AGG--CCGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 17537 0.69 0.310998
Target:  5'- gGCAaacggUGUGCGCGa--AUCCGGUCUGGUg -3'
miRNA:   3'- -CGU-----GCAUGCGCgacUAGGCCGGGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.