miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 23303 0.67 0.44784
Target:  5'- gGC-CGaaUACGCGCcg--CCGacGCCCGGCg -3'
miRNA:   3'- -CGuGC--AUGCGCGacuaGGC--CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 9015 0.67 0.438336
Target:  5'- cGCGCGUACuCGCc-GUCCGGCUCa-- -3'
miRNA:   3'- -CGUGCAUGcGCGacUAGGCCGGGccg -5'
24118 5' -59.2 NC_005263.2 + 18937 0.67 0.438336
Target:  5'- gGCACGa--GCGCUcGAgcgcgCCGGUucgagcgcagCCGGCa -3'
miRNA:   3'- -CGUGCaugCGCGA-CUa----GGCCG----------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 16055 0.67 0.438336
Target:  5'- aCACGguggAUGCGaa-GUCCGGCCCGa- -3'
miRNA:   3'- cGUGCa---UGCGCgacUAGGCCGGGCcg -5'
24118 5' -59.2 NC_005263.2 + 22590 0.67 0.428949
Target:  5'- uGCGgGUGCG-GCUucUCCGGUCagGGCa -3'
miRNA:   3'- -CGUgCAUGCgCGAcuAGGCCGGg-CCG- -5'
24118 5' -59.2 NC_005263.2 + 33148 0.67 0.428949
Target:  5'- uGCuguCGUucccCGCGCUGAacgaUCCGGaucagaUCGGCu -3'
miRNA:   3'- -CGu--GCAu---GCGCGACU----AGGCCg-----GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 14015 0.67 0.428949
Target:  5'- cGCGCGagGCGCaGCgacggcgacGGUUCGGCCacgGGCg -3'
miRNA:   3'- -CGUGCa-UGCG-CGa--------CUAGGCCGGg--CCG- -5'
24118 5' -59.2 NC_005263.2 + 33841 0.67 0.428949
Target:  5'- -aAUGcGCGCGUUGcgCCGGCCgCcGCa -3'
miRNA:   3'- cgUGCaUGCGCGACuaGGCCGG-GcCG- -5'
24118 5' -59.2 NC_005263.2 + 19290 0.67 0.428017
Target:  5'- cCGCGUGCGCGUcacGGUCaccgugaCGcGCCCGGa -3'
miRNA:   3'- cGUGCAUGCGCGa--CUAG-------GC-CGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 14147 0.67 0.419681
Target:  5'- aGCGCGgcCGCcUUGGcgacUUCGGgCCGGCg -3'
miRNA:   3'- -CGUGCauGCGcGACU----AGGCCgGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 45939 0.67 0.419681
Target:  5'- gGCGCGUcuCGCGCcgGAUCaGcGCCaGGCg -3'
miRNA:   3'- -CGUGCAu-GCGCGa-CUAGgC-CGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 17378 0.67 0.419681
Target:  5'- cCGCGUGaa-GCUGucugCCGGCgCGGCc -3'
miRNA:   3'- cGUGCAUgcgCGACua--GGCCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 10420 0.67 0.418761
Target:  5'- cGCGCGUucaacgaACGC-CUGAUCCGG-CgGGa -3'
miRNA:   3'- -CGUGCA-------UGCGcGACUAGGCCgGgCCg -5'
24118 5' -59.2 NC_005263.2 + 43913 0.67 0.410536
Target:  5'- cGCGCGUAC-UGCUucacguUCCGacuGCCUGGCa -3'
miRNA:   3'- -CGUGCAUGcGCGAcu----AGGC---CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 19067 0.67 0.410536
Target:  5'- cGCGCGgccugcGCGCGCUGGUgCgucuugcaGGgCUGGCc -3'
miRNA:   3'- -CGUGCa-----UGCGCGACUAgG--------CCgGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 38875 0.68 0.405109
Target:  5'- gGCACGUucgcCGUGCUGAacgccgaCGGCaccgucacgagcaagCCGGCg -3'
miRNA:   3'- -CGUGCAu---GCGCGACUag-----GCCG---------------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27373 0.68 0.389101
Target:  5'- -gACGaguagGCGCGCUucguugccgaCGGCCCGGCc -3'
miRNA:   3'- cgUGCa----UGCGCGAcuag------GCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 23412 0.68 0.383858
Target:  5'- gGCACGUucgGCGCGCcg--CCGuuaCCGGCg -3'
miRNA:   3'- -CGUGCA---UGCGCGacuaGGCcg-GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 11391 0.68 0.383858
Target:  5'- uCGCGgccUGCGCGCacgUGGUUCGGgCgCGGCu -3'
miRNA:   3'- cGUGC---AUGCGCG---ACUAGGCCgG-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 24457 0.68 0.374368
Target:  5'- gGCACGgcgaaggguuuccUACGCGCgacGAgcUCCGGCUCGa- -3'
miRNA:   3'- -CGUGC-------------AUGCGCGa--CU--AGGCCGGGCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.