miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 6073 0.66 0.484954
Target:  5'- cGCGCGccgacaggaagccUugGCGCgg--CCGGCcgcacugCCGGCa -3'
miRNA:   3'- -CGUGC-------------AugCGCGacuaGGCCG-------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 39102 0.66 0.477015
Target:  5'- gGCGaGUACGCGCgacucgUGcgCCGuGCgUCGGCg -3'
miRNA:   3'- -CGUgCAUGCGCG------ACuaGGC-CG-GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 32525 0.66 0.477015
Target:  5'- aGCACGUcgaACGCGgcgaCUGucggcaggCCGGCCaCGcGCu -3'
miRNA:   3'- -CGUGCA---UGCGC----GACua------GGCCGG-GC-CG- -5'
24118 5' -59.2 NC_005263.2 + 1865 0.66 0.477015
Target:  5'- cGUGCGguucugGCGCGC----CUGGCCCGGa -3'
miRNA:   3'- -CGUGCa-----UGCGCGacuaGGCCGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 31529 0.66 0.477015
Target:  5'- -gGCGaACGCGUcGccgCCGGCCUuGGCg -3'
miRNA:   3'- cgUGCaUGCGCGaCua-GGCCGGG-CCG- -5'
24118 5' -59.2 NC_005263.2 + 17073 0.66 0.477015
Target:  5'- gGCACGgcCGacuGCuUGAUCUGguGCCCGGg -3'
miRNA:   3'- -CGUGCauGCg--CG-ACUAGGC--CGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 15381 0.66 0.476027
Target:  5'- aGCGCGUACGUugcauugGC-GAUCCG-CaCGGCg -3'
miRNA:   3'- -CGUGCAUGCG-------CGaCUAGGCcGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 16498 0.66 0.467183
Target:  5'- cGCGCGgcCGuCGC-GA-CCGGCaugaccaaCCGGCa -3'
miRNA:   3'- -CGUGCauGC-GCGaCUaGGCCG--------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 38429 0.66 0.467183
Target:  5'- aGCGCG-ACGUGCguua-CGuGCUCGGCg -3'
miRNA:   3'- -CGUGCaUGCGCGacuagGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 39024 0.66 0.467183
Target:  5'- gGUAUGccgguCGCGCUG-UUCGGCaCgGGCg -3'
miRNA:   3'- -CGUGCau---GCGCGACuAGGCCG-GgCCG- -5'
24118 5' -59.2 NC_005263.2 + 33475 0.66 0.467183
Target:  5'- aGCGCGUAUG-GCUGAUCga--CUGGCg -3'
miRNA:   3'- -CGUGCAUGCgCGACUAGgccgGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 46086 0.66 0.467183
Target:  5'- gGCGcCGuUAUGCGCcgcugcgGAUuuGGCgCGGCc -3'
miRNA:   3'- -CGU-GC-AUGCGCGa------CUAggCCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27924 0.66 0.467183
Target:  5'- gGCGCGUcgcccgGCGCGCucucgucgaUGAgCCGGa-CGGCg -3'
miRNA:   3'- -CGUGCA------UGCGCG---------ACUaGGCCggGCCG- -5'
24118 5' -59.2 NC_005263.2 + 14413 0.66 0.465229
Target:  5'- gGCGCGUAuugccgcCGCGCUgcgccaaGAUUCGcGCCC-GCa -3'
miRNA:   3'- -CGUGCAU-------GCGCGA-------CUAGGC-CGGGcCG- -5'
24118 5' -59.2 NC_005263.2 + 20795 0.66 0.46328
Target:  5'- gGCGCGUcggguCGCGCcgUGGUauuucugcaggcgCGGCUCGGCc -3'
miRNA:   3'- -CGUGCAu----GCGCG--ACUAg------------GCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 37927 0.67 0.457457
Target:  5'- gGCGCagGCGCGCcg--CCGGCagCCGGUg -3'
miRNA:   3'- -CGUGcaUGCGCGacuaGGCCG--GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 19142 0.67 0.457457
Target:  5'- gGCGCuUGCGCGUcgucgUGAccgugcauccgCCGGCgCGGCu -3'
miRNA:   3'- -CGUGcAUGCGCG-----ACUa----------GGCCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 18122 0.67 0.44784
Target:  5'- gGC-CGaguucUACGCGCUGAUCgCGcuGCCCGccGCu -3'
miRNA:   3'- -CGuGC-----AUGCGCGACUAG-GC--CGGGC--CG- -5'
24118 5' -59.2 NC_005263.2 + 23303 0.67 0.44784
Target:  5'- gGC-CGaaUACGCGCcg--CCGacGCCCGGCg -3'
miRNA:   3'- -CGuGC--AUGCGCGacuaGGC--CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 24067 0.67 0.44784
Target:  5'- aGCGCGaacccggacACGuCGaCcGAUCCGGCCggCGGCg -3'
miRNA:   3'- -CGUGCa--------UGC-GC-GaCUAGGCCGG--GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.