miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 10382 0.68 0.358355
Target:  5'- aGC-CGccACGCGCcGggCCGGCC-GGCg -3'
miRNA:   3'- -CGuGCa-UGCGCGaCuaGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 10420 0.67 0.418761
Target:  5'- cGCGCGUucaacgaACGC-CUGAUCCGG-CgGGa -3'
miRNA:   3'- -CGUGCA-------UGCGcGACUAGGCCgGgCCg -5'
24118 5' -59.2 NC_005263.2 + 10748 0.66 0.507101
Target:  5'- uCGCGcACGCGC--AUgCGGCCguCGGCa -3'
miRNA:   3'- cGUGCaUGCGCGacUAgGCCGG--GCCG- -5'
24118 5' -59.2 NC_005263.2 + 10848 0.68 0.37266
Target:  5'- cGUugGUGCGgGCUacggcgucgcggcgGAaCuCGGCaCCGGCg -3'
miRNA:   3'- -CGugCAUGCgCGA--------------CUaG-GCCG-GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 11391 0.68 0.383858
Target:  5'- uCGCGgccUGCGCGCacgUGGUUCGGgCgCGGCu -3'
miRNA:   3'- cGUGC---AUGCGCG---ACUAGGCCgG-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 11808 0.66 0.51731
Target:  5'- uCGCGUGuCGCuGCauGUCgUGGCUCGGCg -3'
miRNA:   3'- cGUGCAU-GCG-CGacUAG-GCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 11904 0.79 0.0716
Target:  5'- gGCGCcUGCGCGCUGGcguccugugcgauaUCCGGCagCCGGCc -3'
miRNA:   3'- -CGUGcAUGCGCGACU--------------AGGCCG--GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 12708 0.7 0.289164
Target:  5'- -gGCGUAgGgGCc-GUCCGGCUCGGUg -3'
miRNA:   3'- cgUGCAUgCgCGacUAGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 14015 0.67 0.428949
Target:  5'- cGCGCGagGCGCaGCgacggcgacGGUUCGGCCacgGGCg -3'
miRNA:   3'- -CGUGCa-UGCG-CGa--------CUAGGCCGGg--CCG- -5'
24118 5' -59.2 NC_005263.2 + 14055 0.71 0.242934
Target:  5'- cCGCGUcgagcgcauugaGCGCGCcGcgCCGGCCCaugucGGCu -3'
miRNA:   3'- cGUGCA------------UGCGCGaCuaGGCCGGG-----CCG- -5'
24118 5' -59.2 NC_005263.2 + 14147 0.67 0.419681
Target:  5'- aGCGCGgcCGCcUUGGcgacUUCGGgCCGGCg -3'
miRNA:   3'- -CGUGCauGCGcGACU----AGGCCgGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 14248 0.74 0.164496
Target:  5'- -gGCGUGCGgGCUGGcuUgCGGCggCCGGCg -3'
miRNA:   3'- cgUGCAUGCgCGACU--AgGCCG--GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 14413 0.66 0.465229
Target:  5'- gGCGCGUAuugccgcCGCGCUgcgccaaGAUUCGcGCCC-GCa -3'
miRNA:   3'- -CGUGCAU-------GCGCGA-------CUAGGC-CGGGcCG- -5'
24118 5' -59.2 NC_005263.2 + 14442 0.66 0.496979
Target:  5'- -gGCGUGCGCGCgcgccucuUUCGaGCCgagCGGCg -3'
miRNA:   3'- cgUGCAUGCGCGacu-----AGGC-CGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 15381 0.66 0.476027
Target:  5'- aGCGCGUACGUugcauugGC-GAUCCG-CaCGGCg -3'
miRNA:   3'- -CGUGCAUGCG-------CGaCUAGGCcGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 16055 0.67 0.438336
Target:  5'- aCACGguggAUGCGaa-GUCCGGCCCGa- -3'
miRNA:   3'- cGUGCa---UGCGCgacUAGGCCGGGCcg -5'
24118 5' -59.2 NC_005263.2 + 16498 0.66 0.467183
Target:  5'- cGCGCGgcCGuCGC-GA-CCGGCaugaccaaCCGGCa -3'
miRNA:   3'- -CGUGCauGC-GCGaCUaGGCCG--------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 16833 0.66 0.496979
Target:  5'- cUACGUGCGacaGCacuucGA-CCuGCCCGGCg -3'
miRNA:   3'- cGUGCAUGCg--CGa----CUaGGcCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 17073 0.66 0.477015
Target:  5'- gGCACGgcCGacuGCuUGAUCUGguGCCCGGg -3'
miRNA:   3'- -CGUGCauGCg--CG-ACUAGGC--CGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 17088 0.7 0.296306
Target:  5'- cGCACGccGCGCcucgccgcacuGCUGcacgaucuggcGUCCGGCCUGGg -3'
miRNA:   3'- -CGUGCa-UGCG-----------CGAC-----------UAGGCCGGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.