miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 14055 0.71 0.242934
Target:  5'- cCGCGUcgagcgcauugaGCGCGCcGcgCCGGCCCaugucGGCu -3'
miRNA:   3'- cGUGCA------------UGCGCGaCuaGGCCGGG-----CCG- -5'
24118 5' -59.2 NC_005263.2 + 8975 0.71 0.242934
Target:  5'- aCACgGUGCGCcgacGUUGAUCUGGCC-GGCc -3'
miRNA:   3'- cGUG-CAUGCG----CGACUAGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 2674 0.71 0.248515
Target:  5'- -gGCGUGCGUugugguaGCUGAUCgcgCGGCCgcuCGGCa -3'
miRNA:   3'- cgUGCAUGCG-------CGACUAG---GCCGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 24975 0.71 0.249142
Target:  5'- gGCAac-ACGaUGCUGG-CCGGCCUGGCc -3'
miRNA:   3'- -CGUgcaUGC-GCGACUaGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 28914 0.71 0.251662
Target:  5'- uGCGC---CGCGCUGAUCCGucccaucaguuccucGCCaCGGCc -3'
miRNA:   3'- -CGUGcauGCGCGACUAGGC---------------CGG-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 9508 0.71 0.26195
Target:  5'- uCGCGUGCGCggGCUGAaucgUgCGGCCgugcgCGGCa -3'
miRNA:   3'- cGUGCAUGCG--CGACU----AgGCCGG-----GCCG- -5'
24118 5' -59.2 NC_005263.2 + 38417 0.7 0.268552
Target:  5'- cGCGCGUcggguGCGCcgGCgUGAcgCCGGCCaCGGUc -3'
miRNA:   3'- -CGUGCA-----UGCG--CG-ACUa-GGCCGG-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 37371 0.7 0.268552
Target:  5'- uGCGCGUGCGCGaCUGcAUCUuGUCgaCGGCu -3'
miRNA:   3'- -CGUGCAUGCGC-GAC-UAGGcCGG--GCCG- -5'
24118 5' -59.2 NC_005263.2 + 2635 0.7 0.282159
Target:  5'- cGCGCGguucauCGCGCUug-CCGGCguaUCGGCg -3'
miRNA:   3'- -CGUGCau----GCGCGAcuaGGCCG---GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 21389 0.7 0.282159
Target:  5'- uGCGCuu-CGCGCUGccgcaggCCGGCCugcuCGGCg -3'
miRNA:   3'- -CGUGcauGCGCGACua-----GGCCGG----GCCG- -5'
24118 5' -59.2 NC_005263.2 + 36149 0.7 0.288458
Target:  5'- aGUACGggcGCGCGCUcgaggcgaacgucGAUaCCGGCC-GGCu -3'
miRNA:   3'- -CGUGCa--UGCGCGA-------------CUA-GGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 4262 0.7 0.289164
Target:  5'- cGCACGUuguUGCGCccGGUCgacacgaacauCGuGCCCGGCu -3'
miRNA:   3'- -CGUGCAu--GCGCGa-CUAG-----------GC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 12708 0.7 0.289164
Target:  5'- -gGCGUAgGgGCc-GUCCGGCUCGGUg -3'
miRNA:   3'- cgUGCAUgCgCGacUAGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 28062 0.7 0.296306
Target:  5'- aGCGCGUcgcacucaACGCGCggcacGAUCCcguguguuGGCgCGGCc -3'
miRNA:   3'- -CGUGCA--------UGCGCGa----CUAGG--------CCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 32822 0.7 0.296306
Target:  5'- cGCACGUAU-CGCUGAUC-GGCUUuaagGGCg -3'
miRNA:   3'- -CGUGCAUGcGCGACUAGgCCGGG----CCG- -5'
24118 5' -59.2 NC_005263.2 + 35518 0.7 0.296306
Target:  5'- aCACugGCGCGCcGA-CUGcGCCCGGCg -3'
miRNA:   3'- cGUGcaUGCGCGaCUaGGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 47251 0.7 0.296306
Target:  5'- gGCACG-ACGgguaCGCUG-UCCGcGCUCGGUa -3'
miRNA:   3'- -CGUGCaUGC----GCGACuAGGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27678 0.7 0.296306
Target:  5'- aGCACGgcCGCcuucuuguGC-GcgCCGGCgCCGGCg -3'
miRNA:   3'- -CGUGCauGCG--------CGaCuaGGCCG-GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 17088 0.7 0.296306
Target:  5'- cGCACGccGCGCcucgccgcacuGCUGcacgaucuggcGUCCGGCCUGGg -3'
miRNA:   3'- -CGUGCa-UGCG-----------CGAC-----------UAGGCCGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 27319 0.7 0.303583
Target:  5'- gGCGCGacccgACGCGCcgacGAUCagCGGCgCGGCc -3'
miRNA:   3'- -CGUGCa----UGCGCGa---CUAG--GCCGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.