miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 44367 1.13 0.000196
Target:  5'- gGCACGUACGCGCUGAUCCGGCCCGGCg -3'
miRNA:   3'- -CGUGCAUGCGCGACUAGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 17311 0.8 0.05928
Target:  5'- cCACG-GCGCGCgaAUUCGGCCCGGCg -3'
miRNA:   3'- cGUGCaUGCGCGacUAGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 3193 0.79 0.068259
Target:  5'- aGCACGagGC-CGgUGAgCCGGCCCGGCg -3'
miRNA:   3'- -CGUGCa-UGcGCgACUaGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 11904 0.79 0.0716
Target:  5'- gGCGCcUGCGCGCUGGcguccugugcgauaUCCGGCagCCGGCc -3'
miRNA:   3'- -CGUGcAUGCGCGACU--------------AGGCCG--GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27378 0.78 0.07854
Target:  5'- gGCGCGgcggcggccgGCGCGCUGA-CCGGCugcgucacgaCCGGCg -3'
miRNA:   3'- -CGUGCa---------UGCGCGACUaGGCCG----------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 26696 0.78 0.087816
Target:  5'- cGCACGUaAUGCGCcGAgcaggCCGGCCugCGGCa -3'
miRNA:   3'- -CGUGCA-UGCGCGaCUa----GGCCGG--GCCG- -5'
24118 5' -59.2 NC_005263.2 + 30355 0.77 0.103703
Target:  5'- aGCGCGgcCGCGCUGccgCCGGCgCCGaGUg -3'
miRNA:   3'- -CGUGCauGCGCGACua-GGCCG-GGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 5010 0.76 0.106015
Target:  5'- aCACGgugccuuccgcCGCGCUcGAcagCCGGCCCGGCg -3'
miRNA:   3'- cGUGCau---------GCGCGA-CUa--GGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 37706 0.74 0.147803
Target:  5'- cGCGCGccggACcCGCUcgccggCCGGCCCGGCg -3'
miRNA:   3'- -CGUGCa---UGcGCGAcua---GGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 1932 0.74 0.151825
Target:  5'- uGCACGaGCGCGCcGGcaCCGGCgacgCCGGCa -3'
miRNA:   3'- -CGUGCaUGCGCGaCUa-GGCCG----GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 14248 0.74 0.164496
Target:  5'- -gGCGUGCGgGCUGGcuUgCGGCggCCGGCg -3'
miRNA:   3'- cgUGCAUGCgCGACU--AgGCCG--GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 28431 0.73 0.173463
Target:  5'- aGCACau---CGCUGAgcuucaCCGGCCCGGCa -3'
miRNA:   3'- -CGUGcaugcGCGACUa-----GGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 34195 0.73 0.181426
Target:  5'- aGCAUGgACGCGCUGucguucgucacgucGUCCGGuuuCCCGGg -3'
miRNA:   3'- -CGUGCaUGCGCGAC--------------UAGGCC---GGGCCg -5'
24118 5' -59.2 NC_005263.2 + 32736 0.73 0.187731
Target:  5'- uGCaACGUACGCGCUGccgCUuGCgCGGCg -3'
miRNA:   3'- -CG-UGCAUGCGCGACua-GGcCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 8810 0.72 0.219383
Target:  5'- cGCGCGcAUGCGCcug-CCGGCCgcuCGGCg -3'
miRNA:   3'- -CGUGCaUGCGCGacuaGGCCGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 22210 0.72 0.225082
Target:  5'- uUACGUACGuCGCggccgucgccgGcgUCGGCCCGGUu -3'
miRNA:   3'- cGUGCAUGC-GCGa----------CuaGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 2159 0.72 0.225082
Target:  5'- aGCGCcUG-GCGCUGAUCCGGCgCGagacGCg -3'
miRNA:   3'- -CGUGcAUgCGCGACUAGGCCGgGC----CG- -5'
24118 5' -59.2 NC_005263.2 + 44291 0.71 0.230318
Target:  5'- cGCACGUacaaauACGCGCUGAUCgacacugacgcgaUGG-UCGGCg -3'
miRNA:   3'- -CGUGCA------UGCGCGACUAG-------------GCCgGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 47425 0.71 0.235058
Target:  5'- gGCGCGcucggcaagGCGCGCUacgaugaggcguucGAUCUGGCC-GGCa -3'
miRNA:   3'- -CGUGCa--------UGCGCGA--------------CUAGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 38931 0.71 0.236856
Target:  5'- cCGCGUcgcuuCGCGCUGAU-CGGCaCGGCc -3'
miRNA:   3'- cGUGCAu----GCGCGACUAgGCCGgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.