miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 36000 0.66 0.51731
Target:  5'- gGCGCGcGCGcCGCUGcgCauGCCaGGCc -3'
miRNA:   3'- -CGUGCaUGC-GCGACuaGgcCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 6073 0.66 0.484954
Target:  5'- cGCGCGccgacaggaagccUugGCGCgg--CCGGCcgcacugCCGGCa -3'
miRNA:   3'- -CGUGC-------------AugCGCGacuaGGCCG-------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 16498 0.66 0.467183
Target:  5'- cGCGCGgcCGuCGC-GA-CCGGCaugaccaaCCGGCa -3'
miRNA:   3'- -CGUGCauGC-GCGaCUaGGCCG--------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 39024 0.66 0.467183
Target:  5'- gGUAUGccgguCGCGCUG-UUCGGCaCgGGCg -3'
miRNA:   3'- -CGUGCau---GCGCGACuAGGCCG-GgCCG- -5'
24118 5' -59.2 NC_005263.2 + 38429 0.66 0.467183
Target:  5'- aGCGCG-ACGUGCguua-CGuGCUCGGCg -3'
miRNA:   3'- -CGUGCaUGCGCGacuagGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 33475 0.66 0.467183
Target:  5'- aGCGCGUAUG-GCUGAUCga--CUGGCg -3'
miRNA:   3'- -CGUGCAUGCgCGACUAGgccgGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27924 0.66 0.467183
Target:  5'- gGCGCGUcgcccgGCGCGCucucgucgaUGAgCCGGa-CGGCg -3'
miRNA:   3'- -CGUGCA------UGCGCG---------ACUaGGCCggGCCG- -5'
24118 5' -59.2 NC_005263.2 + 14413 0.66 0.465229
Target:  5'- gGCGCGUAuugccgcCGCGCUgcgccaaGAUUCGcGCCC-GCa -3'
miRNA:   3'- -CGUGCAU-------GCGCGA-------CUAGGC-CGGGcCG- -5'
24118 5' -59.2 NC_005263.2 + 20795 0.66 0.46328
Target:  5'- gGCGCGUcggguCGCGCcgUGGUauuucugcaggcgCGGCUCGGCc -3'
miRNA:   3'- -CGUGCAu----GCGCG--ACUAg------------GCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 37551 0.66 0.486949
Target:  5'- aGCACGU-CGCGCaGAcggCCGacaaCCCGcGCa -3'
miRNA:   3'- -CGUGCAuGCGCGaCUa--GGCc---GGGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 30775 0.66 0.496979
Target:  5'- cGCACGacuuccuCGCGCaUGcgCUGcuGCUCGGCg -3'
miRNA:   3'- -CGUGCau-----GCGCG-ACuaGGC--CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 41195 0.66 0.496979
Target:  5'- cGCGCuGUGCGUcCUGAUUgGGacgagacugCCGGCa -3'
miRNA:   3'- -CGUG-CAUGCGcGACUAGgCCg--------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 26812 0.66 0.51731
Target:  5'- cGCACGU-CGCGUaguuggcgcccaUGA-CCuGCCCGaGCc -3'
miRNA:   3'- -CGUGCAuGCGCG------------ACUaGGcCGGGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 11808 0.66 0.51731
Target:  5'- uCGCGUGuCGCuGCauGUCgUGGCUCGGCg -3'
miRNA:   3'- cGUGCAU-GCG-CGacUAG-GCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 18878 0.66 0.513216
Target:  5'- gGCGCGccgcUGCGCGCcGAcggcaaauacgcgCCGGCCUGcGUc -3'
miRNA:   3'- -CGUGC----AUGCGCGaCUa------------GGCCGGGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 34339 0.66 0.507101
Target:  5'- gGCACGaaaGagaaaGCcGAcacaUCCGGCCUGGCc -3'
miRNA:   3'- -CGUGCaugCg----CGaCU----AGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 22407 0.66 0.507101
Target:  5'- -aACGUACGCGCcgccgUGcucgCCGuGUCCGGg -3'
miRNA:   3'- cgUGCAUGCGCG-----ACua--GGC-CGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 45692 0.66 0.506085
Target:  5'- gGCACGcUGC-CGCUGua-CGGCgaccaagcgaccgCCGGCg -3'
miRNA:   3'- -CGUGC-AUGcGCGACuagGCCG-------------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 23085 0.66 0.500006
Target:  5'- gGCGCuGUugGCGUcguucgaucagugggUcGAUCCGGCaaaguucUCGGCg -3'
miRNA:   3'- -CGUG-CAugCGCG---------------A-CUAGGCCG-------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 17498 0.66 0.496979
Target:  5'- cGCGCGcgGCGCGUcGAUCgaucaGGCggCGGCu -3'
miRNA:   3'- -CGUGCa-UGCGCGaCUAGg----CCGg-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.