miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 3193 0.79 0.068259
Target:  5'- aGCACGagGC-CGgUGAgCCGGCCCGGCg -3'
miRNA:   3'- -CGUGCa-UGcGCgACUaGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 12708 0.7 0.289164
Target:  5'- -gGCGUAgGgGCc-GUCCGGCUCGGUg -3'
miRNA:   3'- cgUGCAUgCgCGacUAGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 47251 0.7 0.296306
Target:  5'- gGCACG-ACGgguaCGCUG-UCCGcGCUCGGUa -3'
miRNA:   3'- -CGUGCaUGC----GCGACuAGGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 38723 0.66 0.51731
Target:  5'- aGCugGccgcCGCGCUGAaauUCCcGCagccgCCGGCg -3'
miRNA:   3'- -CGugCau--GCGCGACU---AGGcCG-----GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 37706 0.74 0.147803
Target:  5'- cGCGCGccggACcCGCUcgccggCCGGCCCGGCg -3'
miRNA:   3'- -CGUGCa---UGcGCGAcua---GGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 1932 0.74 0.151825
Target:  5'- uGCACGaGCGCGCcGGcaCCGGCgacgCCGGCa -3'
miRNA:   3'- -CGUGCaUGCGCGaCUa-GGCCG----GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 44291 0.71 0.230318
Target:  5'- cGCACGUacaaauACGCGCUGAUCgacacugacgcgaUGG-UCGGCg -3'
miRNA:   3'- -CGUGCA------UGCGCGACUAG-------------GCCgGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 47425 0.71 0.235058
Target:  5'- gGCGCGcucggcaagGCGCGCUacgaugaggcguucGAUCUGGCC-GGCa -3'
miRNA:   3'- -CGUGCa--------UGCGCGA--------------CUAGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 14055 0.71 0.242934
Target:  5'- cCGCGUcgagcgcauugaGCGCGCcGcgCCGGCCCaugucGGCu -3'
miRNA:   3'- cGUGCA------------UGCGCGaCuaGGCCGGG-----CCG- -5'
24118 5' -59.2 NC_005263.2 + 2635 0.7 0.282159
Target:  5'- cGCGCGguucauCGCGCUug-CCGGCguaUCGGCg -3'
miRNA:   3'- -CGUGCau----GCGCGAcuaGGCCG---GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 9508 0.71 0.26195
Target:  5'- uCGCGUGCGCggGCUGAaucgUgCGGCCgugcgCGGCa -3'
miRNA:   3'- cGUGCAUGCG--CGACU----AgGCCGG-----GCCG- -5'
24118 5' -59.2 NC_005263.2 + 8975 0.71 0.242934
Target:  5'- aCACgGUGCGCcgacGUUGAUCUGGCC-GGCc -3'
miRNA:   3'- cGUG-CAUGCG----CGACUAGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 11904 0.79 0.0716
Target:  5'- gGCGCcUGCGCGCUGGcguccugugcgauaUCCGGCagCCGGCc -3'
miRNA:   3'- -CGUGcAUGCGCGACU--------------AGGCCG--GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 38417 0.7 0.268552
Target:  5'- cGCGCGUcggguGCGCcgGCgUGAcgCCGGCCaCGGUc -3'
miRNA:   3'- -CGUGCA-----UGCG--CG-ACUa-GGCCGG-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 30355 0.77 0.103703
Target:  5'- aGCGCGgcCGCGCUGccgCCGGCgCCGaGUg -3'
miRNA:   3'- -CGUGCauGCGCGACua-GGCCG-GGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 38931 0.71 0.236856
Target:  5'- cCGCGUcgcuuCGCGCUGAU-CGGCaCGGCc -3'
miRNA:   3'- cGUGCAu----GCGCGACUAgGCCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 21389 0.7 0.282159
Target:  5'- uGCGCuu-CGCGCUGccgcaggCCGGCCugcuCGGCg -3'
miRNA:   3'- -CGUGcauGCGCGACua-----GGCCGG----GCCG- -5'
24118 5' -59.2 NC_005263.2 + 4262 0.7 0.289164
Target:  5'- cGCACGUuguUGCGCccGGUCgacacgaacauCGuGCCCGGCu -3'
miRNA:   3'- -CGUGCAu--GCGCGa-CUAG-----------GC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 5010 0.76 0.106015
Target:  5'- aCACGgugccuuccgcCGCGCUcGAcagCCGGCCCGGCg -3'
miRNA:   3'- cGUGCau---------GCGCGA-CUa--GGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 28431 0.73 0.173463
Target:  5'- aGCACau---CGCUGAgcuucaCCGGCCCGGCa -3'
miRNA:   3'- -CGUGcaugcGCGACUa-----GGCCGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.