miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 38177 0.69 0.334062
Target:  5'- uCGCGUuCGaCGCUGAUCCaGCUgccgaucuCGGCa -3'
miRNA:   3'- cGUGCAuGC-GCGACUAGGcCGG--------GCCG- -5'
24118 5' -59.2 NC_005263.2 + 47251 0.7 0.296306
Target:  5'- gGCACG-ACGgguaCGCUG-UCCGcGCUCGGUa -3'
miRNA:   3'- -CGUGCaUGC----GCGACuAGGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 8975 0.71 0.242934
Target:  5'- aCACgGUGCGCcgacGUUGAUCUGGCC-GGCc -3'
miRNA:   3'- cGUG-CAUGCG----CGACUAGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 5010 0.76 0.106015
Target:  5'- aCACGgugccuuccgcCGCGCUcGAcagCCGGCCCGGCg -3'
miRNA:   3'- cGUGCau---------GCGCGA-CUa--GGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 23303 0.67 0.44784
Target:  5'- gGC-CGaaUACGCGCcg--CCGacGCCCGGCg -3'
miRNA:   3'- -CGuGC--AUGCGCGacuaGGC--CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 27373 0.68 0.389101
Target:  5'- -gACGaguagGCGCGCUucguugccgaCGGCCCGGCc -3'
miRNA:   3'- cgUGCa----UGCGCGAcuag------GCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 12708 0.7 0.289164
Target:  5'- -gGCGUAgGgGCc-GUCCGGCUCGGUg -3'
miRNA:   3'- cgUGCAUgCgCGacUAGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 30355 0.77 0.103703
Target:  5'- aGCGCGgcCGCGCUGccgCCGGCgCCGaGUg -3'
miRNA:   3'- -CGUGCauGCGCGACua-GGCCG-GGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 11391 0.68 0.383858
Target:  5'- uCGCGgccUGCGCGCacgUGGUUCGGgCgCGGCu -3'
miRNA:   3'- cGUGC---AUGCGCG---ACUAGGCCgG-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 11904 0.79 0.0716
Target:  5'- gGCGCcUGCGCGCUGGcguccugugcgauaUCCGGCagCCGGCc -3'
miRNA:   3'- -CGUGcAUGCGCGACU--------------AGGCCG--GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 4262 0.7 0.289164
Target:  5'- cGCACGUuguUGCGCccGGUCgacacgaacauCGuGCCCGGCu -3'
miRNA:   3'- -CGUGCAu--GCGCGa-CUAG-----------GC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 158 0.68 0.358355
Target:  5'- gGUGCGaGCaCGC-GAUCCGcGCCCGGg -3'
miRNA:   3'- -CGUGCaUGcGCGaCUAGGC-CGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 38417 0.7 0.268552
Target:  5'- cGCGCGUcggguGCGCcgGCgUGAcgCCGGCCaCGGUc -3'
miRNA:   3'- -CGUGCA-----UGCG--CG-ACUa-GGCCGG-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 14055 0.71 0.242934
Target:  5'- cCGCGUcgagcgcauugaGCGCGCcGcgCCGGCCCaugucGGCu -3'
miRNA:   3'- cGUGCA------------UGCGCGaCuaGGCCGGG-----CCG- -5'
24118 5' -59.2 NC_005263.2 + 44291 0.71 0.230318
Target:  5'- cGCACGUacaaauACGCGCUGAUCgacacugacgcgaUGG-UCGGCg -3'
miRNA:   3'- -CGUGCA------UGCGCGACUAG-------------GCCgGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 37706 0.74 0.147803
Target:  5'- cGCGCGccggACcCGCUcgccggCCGGCCCGGCg -3'
miRNA:   3'- -CGUGCa---UGcGCGAcua---GGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 15381 0.66 0.476027
Target:  5'- aGCGCGUACGUugcauugGC-GAUCCG-CaCGGCg -3'
miRNA:   3'- -CGUGCAUGCG-------CGaCUAGGCcGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 19142 0.67 0.457457
Target:  5'- gGCGCuUGCGCGUcgucgUGAccgugcauccgCCGGCgCGGCu -3'
miRNA:   3'- -CGUGcAUGCGCG-----ACUa----------GGCCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 33841 0.67 0.428949
Target:  5'- -aAUGcGCGCGUUGcgCCGGCCgCcGCa -3'
miRNA:   3'- cgUGCaUGCGCGACuaGGCCGG-GcCG- -5'
24118 5' -59.2 NC_005263.2 + 43913 0.67 0.410536
Target:  5'- cGCGCGUAC-UGCUucacguUCCGacuGCCUGGCa -3'
miRNA:   3'- -CGUGCAUGcGCGAcu----AGGC---CGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.