miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 158 0.68 0.358355
Target:  5'- gGUGCGaGCaCGC-GAUCCGcGCCCGGg -3'
miRNA:   3'- -CGUGCaUGcGCGaCUAGGC-CGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 401 0.66 0.486949
Target:  5'- aGCGCGUAgaGCGCacGAUCCuugaucaagacaGGCUgcgCGGCa -3'
miRNA:   3'- -CGUGCAUg-CGCGa-CUAGG------------CCGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 1556 0.69 0.318549
Target:  5'- aGCACGUuCGUGUUGcgCaCGGUauagaCGGCa -3'
miRNA:   3'- -CGUGCAuGCGCGACuaG-GCCGg----GCCG- -5'
24118 5' -59.2 NC_005263.2 + 1865 0.66 0.477015
Target:  5'- cGUGCGguucugGCGCGC----CUGGCCCGGa -3'
miRNA:   3'- -CGUGCa-----UGCGCGacuaGGCCGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 1932 0.74 0.151825
Target:  5'- uGCACGaGCGCGCcGGcaCCGGCgacgCCGGCa -3'
miRNA:   3'- -CGUGCaUGCGCGaCUa-GGCCG----GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 2159 0.72 0.225082
Target:  5'- aGCGCcUG-GCGCUGAUCCGGCgCGagacGCg -3'
miRNA:   3'- -CGUGcAUgCGCGACUAGGCCGgGC----CG- -5'
24118 5' -59.2 NC_005263.2 + 2635 0.7 0.282159
Target:  5'- cGCGCGguucauCGCGCUug-CCGGCguaUCGGCg -3'
miRNA:   3'- -CGUGCau----GCGCGAcuaGGCCG---GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 2674 0.71 0.248515
Target:  5'- -gGCGUGCGUugugguaGCUGAUCgcgCGGCCgcuCGGCa -3'
miRNA:   3'- cgUGCAUGCG-------CGACUAG---GCCGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 3193 0.79 0.068259
Target:  5'- aGCACGagGC-CGgUGAgCCGGCCCGGCg -3'
miRNA:   3'- -CGUGCa-UGcGCgACUaGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 3320 0.68 0.366723
Target:  5'- cGCGCGguguucaacgucUGCGCGCcg--CCGGCgCCGcGCg -3'
miRNA:   3'- -CGUGC------------AUGCGCGacuaGGCCG-GGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 4262 0.7 0.289164
Target:  5'- cGCACGUuguUGCGCccGGUCgacacgaacauCGuGCCCGGCu -3'
miRNA:   3'- -CGUGCAu--GCGCGa-CUAG-----------GC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 5010 0.76 0.106015
Target:  5'- aCACGgugccuuccgcCGCGCUcGAcagCCGGCCCGGCg -3'
miRNA:   3'- cGUGCau---------GCGCGA-CUa--GGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 6073 0.66 0.484954
Target:  5'- cGCGCGccgacaggaagccUugGCGCgg--CCGGCcgcacugCCGGCa -3'
miRNA:   3'- -CGUGC-------------AugCGCGacuaGGCCG-------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 6748 0.67 0.44784
Target:  5'- cGCGCGUcacguccaucGCGCGCcGGg-CGaGCUCGGCc -3'
miRNA:   3'- -CGUGCA----------UGCGCGaCUagGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 8765 0.7 0.303583
Target:  5'- -aACGcUGCGCGgcaggaUGAcgCCGGCCCGcGCg -3'
miRNA:   3'- cgUGC-AUGCGCg-----ACUa-GGCCGGGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 8810 0.72 0.219383
Target:  5'- cGCGCGcAUGCGCcug-CCGGCCgcuCGGCg -3'
miRNA:   3'- -CGUGCaUGCGCGacuaGGCCGG---GCCG- -5'
24118 5' -59.2 NC_005263.2 + 8975 0.71 0.242934
Target:  5'- aCACgGUGCGCcgacGUUGAUCUGGCC-GGCc -3'
miRNA:   3'- cGUG-CAUGCG----CGACUAGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 9015 0.67 0.438336
Target:  5'- cGCGCGUACuCGCc-GUCCGGCUCa-- -3'
miRNA:   3'- -CGUGCAUGcGCGacUAGGCCGGGccg -5'
24118 5' -59.2 NC_005263.2 + 9168 0.66 0.507101
Target:  5'- uGCACGaagccgAUGCGCgacgUCGaGCUCGGCg -3'
miRNA:   3'- -CGUGCa-----UGCGCGacuaGGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 9508 0.71 0.26195
Target:  5'- uCGCGUGCGCggGCUGAaucgUgCGGCCgugcgCGGCa -3'
miRNA:   3'- cGUGCAUGCG--CGACU----AgGCCGG-----GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.