miRNA display CGI


Results 1 - 20 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 47425 0.71 0.235058
Target:  5'- gGCGCGcucggcaagGCGCGCUacgaugaggcguucGAUCUGGCC-GGCa -3'
miRNA:   3'- -CGUGCa--------UGCGCGA--------------CUAGGCCGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 47251 0.7 0.296306
Target:  5'- gGCACG-ACGgguaCGCUG-UCCGcGCUCGGUa -3'
miRNA:   3'- -CGUGCaUGC----GCGACuAGGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 46086 0.66 0.467183
Target:  5'- gGCGcCGuUAUGCGCcgcugcgGAUuuGGCgCGGCc -3'
miRNA:   3'- -CGU-GC-AUGCGCGa------CUAggCCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 45939 0.67 0.419681
Target:  5'- gGCGCGUcuCGCGCcgGAUCaGcGCCaGGCg -3'
miRNA:   3'- -CGUGCAu-GCGCGa-CUAGgC-CGGgCCG- -5'
24118 5' -59.2 NC_005263.2 + 45779 0.69 0.353399
Target:  5'- cGCACGgugcuCGCGUUccgccaguucaacgcGGgcgugCCGGCCaCGGCg -3'
miRNA:   3'- -CGUGCau---GCGCGA---------------CUa----GGCCGG-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 45692 0.66 0.506085
Target:  5'- gGCACGcUGC-CGCUGua-CGGCgaccaagcgaccgCCGGCg -3'
miRNA:   3'- -CGUGC-AUGcGCGACuagGCCG-------------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 44367 1.13 0.000196
Target:  5'- gGCACGUACGCGCUGAUCCGGCCCGGCg -3'
miRNA:   3'- -CGUGCAUGCGCGACUAGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 44291 0.71 0.230318
Target:  5'- cGCACGUacaaauACGCGCUGAUCgacacugacgcgaUGG-UCGGCg -3'
miRNA:   3'- -CGUGCA------UGCGCGACUAG-------------GCCgGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 43913 0.67 0.410536
Target:  5'- cGCGCGUAC-UGCUucacguUCCGacuGCCUGGCa -3'
miRNA:   3'- -CGUGCAUGcGCGAcu----AGGC---CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 42916 0.66 0.507101
Target:  5'- cGCGaGUGCGCgagcaagaaucGCUacccggacgaGAUCaCGGCCCGuGCg -3'
miRNA:   3'- -CGUgCAUGCG-----------CGA----------CUAG-GCCGGGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 41195 0.66 0.496979
Target:  5'- cGCGCuGUGCGUcCUGAUUgGGacgagacugCCGGCa -3'
miRNA:   3'- -CGUG-CAUGCGcGACUAGgCCg--------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 40803 0.66 0.496979
Target:  5'- aGCGCau-CGCGCaGAcCUGGCCgcaGGCa -3'
miRNA:   3'- -CGUGcauGCGCGaCUaGGCCGGg--CCG- -5'
24118 5' -59.2 NC_005263.2 + 39102 0.66 0.477015
Target:  5'- gGCGaGUACGCGCgacucgUGcgCCGuGCgUCGGCg -3'
miRNA:   3'- -CGUgCAUGCGCG------ACuaGGC-CG-GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 39024 0.66 0.467183
Target:  5'- gGUAUGccgguCGCGCUG-UUCGGCaCgGGCg -3'
miRNA:   3'- -CGUGCau---GCGCGACuAGGCCG-GgCCG- -5'
24118 5' -59.2 NC_005263.2 + 38931 0.71 0.236856
Target:  5'- cCGCGUcgcuuCGCGCUGAU-CGGCaCGGCc -3'
miRNA:   3'- cGUGCAu----GCGCGACUAgGCCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 38875 0.68 0.405109
Target:  5'- gGCACGUucgcCGUGCUGAacgccgaCGGCaccgucacgagcaagCCGGCg -3'
miRNA:   3'- -CGUGCAu---GCGCGACUag-----GCCG---------------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 38723 0.66 0.51731
Target:  5'- aGCugGccgcCGCGCUGAaauUCCcGCagccgCCGGCg -3'
miRNA:   3'- -CGugCau--GCGCGACU---AGGcCG-----GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 38429 0.66 0.467183
Target:  5'- aGCGCG-ACGUGCguua-CGuGCUCGGCg -3'
miRNA:   3'- -CGUGCaUGCGCGacuagGC-CGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 38417 0.7 0.268552
Target:  5'- cGCGCGUcggguGCGCcgGCgUGAcgCCGGCCaCGGUc -3'
miRNA:   3'- -CGUGCA-----UGCG--CG-ACUa-GGCCGG-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 38231 0.69 0.334062
Target:  5'- aGCAUGaaaGCGCcgaggacaacgaGCUGaAUCCGGCC-GGCg -3'
miRNA:   3'- -CGUGCa--UGCG------------CGAC-UAGGCCGGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.