miRNA display CGI


Results 41 - 60 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24118 5' -59.2 NC_005263.2 + 17311 0.8 0.05928
Target:  5'- cCACG-GCGCGCgaAUUCGGCCCGGCg -3'
miRNA:   3'- cGUGCaUGCGCGacUAGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 17378 0.67 0.419681
Target:  5'- cCGCGUGaa-GCUGucugCCGGCgCGGCc -3'
miRNA:   3'- cGUGCAUgcgCGACua--GGCCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 17498 0.66 0.496979
Target:  5'- cGCGCGcgGCGCGUcGAUCgaucaGGCggCGGCu -3'
miRNA:   3'- -CGUGCa-UGCGCGaCUAGg----CCGg-GCCG- -5'
24118 5' -59.2 NC_005263.2 + 17537 0.69 0.310998
Target:  5'- gGCAaacggUGUGCGCGa--AUCCGGUCUGGUg -3'
miRNA:   3'- -CGU-----GCAUGCGCgacUAGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 18122 0.67 0.44784
Target:  5'- gGC-CGaguucUACGCGCUGAUCgCGcuGCCCGccGCu -3'
miRNA:   3'- -CGuGC-----AUGCGCGACUAG-GC--CGGGC--CG- -5'
24118 5' -59.2 NC_005263.2 + 18543 0.68 0.366723
Target:  5'- aGCGCGUucaagaaguuCGCGCagc-CCGGCaCCGGUg -3'
miRNA:   3'- -CGUGCAu---------GCGCGacuaGGCCG-GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 18802 0.69 0.334062
Target:  5'- cGCGCGcgAUGCGCaug-CCGaCCCGGCc -3'
miRNA:   3'- -CGUGCa-UGCGCGacuaGGCcGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 18878 0.66 0.513216
Target:  5'- gGCGCGccgcUGCGCGCcGAcggcaaauacgcgCCGGCCUGcGUc -3'
miRNA:   3'- -CGUGC----AUGCGCGaCUa------------GGCCGGGC-CG- -5'
24118 5' -59.2 NC_005263.2 + 18937 0.67 0.438336
Target:  5'- gGCACGa--GCGCUcGAgcgcgCCGGUucgagcgcagCCGGCa -3'
miRNA:   3'- -CGUGCaugCGCGA-CUa----GGCCG----------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 19067 0.67 0.410536
Target:  5'- cGCGCGgccugcGCGCGCUGGUgCgucuugcaGGgCUGGCc -3'
miRNA:   3'- -CGUGCa-----UGCGCGACUAgG--------CCgGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 19142 0.67 0.457457
Target:  5'- gGCGCuUGCGCGUcgucgUGAccgugcauccgCCGGCgCGGCu -3'
miRNA:   3'- -CGUGcAUGCGCG-----ACUa----------GGCCGgGCCG- -5'
24118 5' -59.2 NC_005263.2 + 19290 0.67 0.428017
Target:  5'- cCGCGUGCGCGUcacGGUCaccgugaCGcGCCCGGa -3'
miRNA:   3'- cGUGCAUGCGCGa--CUAG-------GC-CGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 20795 0.66 0.46328
Target:  5'- gGCGCGUcggguCGCGCcgUGGUauuucugcaggcgCGGCUCGGCc -3'
miRNA:   3'- -CGUGCAu----GCGCG--ACUAg------------GCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 21389 0.7 0.282159
Target:  5'- uGCGCuu-CGCGCUGccgcaggCCGGCCugcuCGGCg -3'
miRNA:   3'- -CGUGcauGCGCGACua-----GGCCGG----GCCG- -5'
24118 5' -59.2 NC_005263.2 + 21713 0.69 0.310998
Target:  5'- gGUGCGUGCG-GCUGGaaUCCaaGGCUCGGg -3'
miRNA:   3'- -CGUGCAUGCgCGACU--AGG--CCGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 22210 0.72 0.225082
Target:  5'- uUACGUACGuCGCggccgucgccgGcgUCGGCCCGGUu -3'
miRNA:   3'- cGUGCAUGC-GCGa----------CuaGGCCGGGCCG- -5'
24118 5' -59.2 NC_005263.2 + 22407 0.66 0.507101
Target:  5'- -aACGUACGCGCcgccgUGcucgCCGuGUCCGGg -3'
miRNA:   3'- cgUGCAUGCGCG-----ACua--GGC-CGGGCCg -5'
24118 5' -59.2 NC_005263.2 + 22590 0.67 0.428949
Target:  5'- uGCGgGUGCG-GCUucUCCGGUCagGGCa -3'
miRNA:   3'- -CGUgCAUGCgCGAcuAGGCCGGg-CCG- -5'
24118 5' -59.2 NC_005263.2 + 23085 0.66 0.500006
Target:  5'- gGCGCuGUugGCGUcguucgaucagugggUcGAUCCGGCaaaguucUCGGCg -3'
miRNA:   3'- -CGUG-CAugCGCG---------------A-CUAGGCCG-------GGCCG- -5'
24118 5' -59.2 NC_005263.2 + 23303 0.67 0.44784
Target:  5'- gGC-CGaaUACGCGCcg--CCGacGCCCGGCg -3'
miRNA:   3'- -CGuGC--AUGCGCGacuaGGC--CGGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.