Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24119 | 3' | -60.3 | NC_005263.2 | + | 44180 | 1.12 | 0.000171 |
Target: 5'- aCCUGCCGGUCGGCCUGCCGCCAUUGCc -3' miRNA: 3'- -GGACGGCCAGCCGGACGGCGGUAACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 19110 | 0.79 | 0.054827 |
Target: 5'- aCUGCCGGUCGGCCgcGCCgagcgcaucGCCGggcgcUUGCg -3' miRNA: 3'- gGACGGCCAGCCGGa-CGG---------CGGU-----AACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 45489 | 0.76 | 0.093426 |
Target: 5'- aCC-GCgCGGUCGGCCUGUCGCgCAauuggGCg -3' miRNA: 3'- -GGaCG-GCCAGCCGGACGGCG-GUaa---CG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 17390 | 0.75 | 0.107263 |
Target: 5'- gUCUGCCGGcgCGGCC-GCgCGCCug-GCg -3' miRNA: 3'- -GGACGGCCa-GCCGGaCG-GCGGuaaCG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 37910 | 0.75 | 0.109951 |
Target: 5'- cCCgagGCCGGcgaggcuUCGGCCUGCuCGCgAUUcGCg -3' miRNA: 3'- -GGa--CGGCC-------AGCCGGACG-GCGgUAA-CG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 39985 | 0.74 | 0.116468 |
Target: 5'- uCCUGCauaUgGGCCUGCCGCCGacgGCg -3' miRNA: 3'- -GGACGgccAgCCGGACGGCGGUaa-CG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 29435 | 0.73 | 0.137121 |
Target: 5'- --gGCCGGUaGGCau-CCGCCAUUGCa -3' miRNA: 3'- ggaCGGCCAgCCGgacGGCGGUAACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 41261 | 0.73 | 0.152707 |
Target: 5'- aCCUgucGCCGGUCGuGUC-GCCGUCGcUGCg -3' miRNA: 3'- -GGA---CGGCCAGC-CGGaCGGCGGUaACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 5539 | 0.73 | 0.156848 |
Target: 5'- gCCgugGCCGGcaaCGGCCUGgCGCgAaUGCa -3' miRNA: 3'- -GGa--CGGCCa--GCCGGACgGCGgUaACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 39722 | 0.72 | 0.169885 |
Target: 5'- gCUUcCUGGUCGGCCUGCCugcGCCAcUGa -3' miRNA: 3'- -GGAcGGCCAGCCGGACGG---CGGUaACg -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 45399 | 0.71 | 0.188277 |
Target: 5'- aUCUcGCCGacgaacucggucuGUCGGCC-GCCGCCGgcGCg -3' miRNA: 3'- -GGA-CGGC-------------CAGCCGGaCGGCGGUaaCG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 20723 | 0.71 | 0.19889 |
Target: 5'- --aGCCGGUCagcgcGCCgGCCGCCGccGCg -3' miRNA: 3'- ggaCGGCCAGc----CGGaCGGCGGUaaCG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 32687 | 0.71 | 0.204124 |
Target: 5'- aCCUguacgGCCGGcucacCGGCUUGCUGCCcgccgUGCg -3' miRNA: 3'- -GGA-----CGGCCa----GCCGGACGGCGGua---ACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 23564 | 0.71 | 0.204124 |
Target: 5'- gCCgccGCCGccCGcGCC-GCCGCCGUUGCc -3' miRNA: 3'- -GGa--CGGCcaGC-CGGaCGGCGGUAACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 42009 | 0.71 | 0.209478 |
Target: 5'- aCgUGCCGGcagugCGGCCgGCCgcGCCAagGCu -3' miRNA: 3'- -GgACGGCCa----GCCGGaCGG--CGGUaaCG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 30347 | 0.71 | 0.209478 |
Target: 5'- gCgUGCCGaGcgCGGCCgcgcUGCCGCCGgcGCc -3' miRNA: 3'- -GgACGGC-Ca-GCCGG----ACGGCGGUaaCG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 45723 | 0.71 | 0.209478 |
Target: 5'- -gUGCCc--CGGCCUGCCGCUcggUGCu -3' miRNA: 3'- ggACGGccaGCCGGACGGCGGua-ACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 27471 | 0.7 | 0.221116 |
Target: 5'- uUCUGCCGGaUCGaGCacaacggcggauugGCCGCC-UUGCa -3' miRNA: 3'- -GGACGGCC-AGC-CGga------------CGGCGGuAACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 36142 | 0.7 | 0.232115 |
Target: 5'- gCCUGCCguauacgugaGGUuggcgaCGGCCUGCgCGaCCggUGCg -3' miRNA: 3'- -GGACGG----------CCA------GCCGGACG-GC-GGuaACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 38571 | 0.7 | 0.232115 |
Target: 5'- --cGCCGcGUCGGUcgCUGCCGCgCAcgGCc -3' miRNA: 3'- ggaCGGC-CAGCCG--GACGGCG-GUaaCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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