miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24119 3' -60.3 NC_005263.2 + 173 0.67 0.385518
Target:  5'- uCCgcgcCCGGggCGaGCCcGCUGCCcgUGCg -3'
miRNA:   3'- -GGac--GGCCa-GC-CGGaCGGCGGuaACG- -5'
24119 3' -60.3 NC_005263.2 + 2400 0.67 0.368344
Target:  5'- --cGCCGG-CGGUCgcuugGUCGCCGUacaGCg -3'
miRNA:   3'- ggaCGGCCaGCCGGa----CGGCGGUAa--CG- -5'
24119 3' -60.3 NC_005263.2 + 2854 0.69 0.290573
Target:  5'- -aUGCgGGcCGGCCcGcCCGCCAgUUGUa -3'
miRNA:   3'- ggACGgCCaGCCGGaC-GGCGGU-AACG- -5'
24119 3' -60.3 NC_005263.2 + 3402 0.66 0.394301
Target:  5'- gCUGCa-GUCGGCC-GCCGaCGUgUGCg -3'
miRNA:   3'- gGACGgcCAGCCGGaCGGCgGUA-ACG- -5'
24119 3' -60.3 NC_005263.2 + 5539 0.73 0.156848
Target:  5'- gCCgugGCCGGcaaCGGCCUGgCGCgAaUGCa -3'
miRNA:   3'- -GGa--CGGCCa--GCCGGACgGCGgUaACG- -5'
24119 3' -60.3 NC_005263.2 + 8359 0.67 0.376866
Target:  5'- gCUUGCCgaGGUC-GCUUGUCGUCAgugGCg -3'
miRNA:   3'- -GGACGG--CCAGcCGGACGGCGGUaa-CG- -5'
24119 3' -60.3 NC_005263.2 + 8866 0.66 0.403213
Target:  5'- gCCga-CGGgauacgCGGCCcgUGCUGCCggUGCa -3'
miRNA:   3'- -GGacgGCCa-----GCCGG--ACGGCGGuaACG- -5'
24119 3' -60.3 NC_005263.2 + 9288 0.67 0.385518
Target:  5'- cCCaUGCCGGacauuUCGGCaagcucagcgaUGCCGCUcgUGg -3'
miRNA:   3'- -GG-ACGGCC-----AGCCGg----------ACGGCGGuaACg -5'
24119 3' -60.3 NC_005263.2 + 9972 0.66 0.394301
Target:  5'- cCCUGCgGGUgcgcacgccgucCGGUUcGCCGUC-UUGCg -3'
miRNA:   3'- -GGACGgCCA------------GCCGGaCGGCGGuAACG- -5'
24119 3' -60.3 NC_005263.2 + 10181 0.69 0.269895
Target:  5'- gCUGCCGGcggCGcGCCUGC-GCCcg-GCu -3'
miRNA:   3'- gGACGGCCa--GC-CGGACGgCGGuaaCG- -5'
24119 3' -60.3 NC_005263.2 + 12666 0.66 0.449618
Target:  5'- gUCgGCCGG-CGcGCCgggGUCGUCGUUcGCg -3'
miRNA:   3'- -GGaCGGCCaGC-CGGa--CGGCGGUAA-CG- -5'
24119 3' -60.3 NC_005263.2 + 13006 0.68 0.327756
Target:  5'- --gGCCGGUCGGCgUGauGCCGaguaGCu -3'
miRNA:   3'- ggaCGGCCAGCCGgACggCGGUaa--CG- -5'
24119 3' -60.3 NC_005263.2 + 13165 0.67 0.351703
Target:  5'- gCUGCCGGcaCGGCaCUaaCGCCGagUGCg -3'
miRNA:   3'- gGACGGCCa-GCCG-GAcgGCGGUa-ACG- -5'
24119 3' -60.3 NC_005263.2 + 13758 0.67 0.351703
Target:  5'- gCCagGCCGGaugugUCGGCUuucucuuucgUGCCGCCGaucGCu -3'
miRNA:   3'- -GGa-CGGCC-----AGCCGG----------ACGGCGGUaa-CG- -5'
24119 3' -60.3 NC_005263.2 + 14134 0.67 0.385518
Target:  5'- --aGCCGcagCGGCCagcgcgGCCGCCuugGCg -3'
miRNA:   3'- ggaCGGCca-GCCGGa-----CGGCGGuaaCG- -5'
24119 3' -60.3 NC_005263.2 + 15199 0.7 0.250418
Target:  5'- --aGCCGGUCaGCggGCCGCCGacGCc -3'
miRNA:   3'- ggaCGGCCAGcCGgaCGGCGGUaaCG- -5'
24119 3' -60.3 NC_005263.2 + 15381 0.7 0.250418
Target:  5'- gCUGUCGGguagCGaCCcgGCCGCCGUgcaUGCg -3'
miRNA:   3'- gGACGGCCa---GCcGGa-CGGCGGUA---ACG- -5'
24119 3' -60.3 NC_005263.2 + 17390 0.75 0.107263
Target:  5'- gUCUGCCGGcgCGGCC-GCgCGCCug-GCg -3'
miRNA:   3'- -GGACGGCCa-GCCGGaCG-GCGGuaaCG- -5'
24119 3' -60.3 NC_005263.2 + 17407 0.68 0.30064
Target:  5'- aCUGCCGcuacugcaaagcgaaGcCGGCCUGCcCGCgCAU-GCa -3'
miRNA:   3'- gGACGGC---------------CaGCCGGACG-GCG-GUAaCG- -5'
24119 3' -60.3 NC_005263.2 + 19064 0.68 0.312473
Target:  5'- --cGCCGcG-CGGCCUGCgcgCGCUggUGCg -3'
miRNA:   3'- ggaCGGC-CaGCCGGACG---GCGGuaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.