miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24119 3' -60.3 NC_005263.2 + 47492 0.66 0.434444
Target:  5'- aCCgGCCcgcuGUCgGGCaCUGCCuacguuacugauggcGCCAUUGCc -3'
miRNA:   3'- -GGaCGGc---CAG-CCG-GACGG---------------CGGUAACG- -5'
24119 3' -60.3 NC_005263.2 + 45723 0.71 0.209478
Target:  5'- -gUGCCc--CGGCCUGCCGCUcggUGCu -3'
miRNA:   3'- ggACGGccaGCCGGACGGCGGua-ACG- -5'
24119 3' -60.3 NC_005263.2 + 45489 0.76 0.093426
Target:  5'- aCC-GCgCGGUCGGCCUGUCGCgCAauuggGCg -3'
miRNA:   3'- -GGaCG-GCCAGCCGGACGGCG-GUaa---CG- -5'
24119 3' -60.3 NC_005263.2 + 45399 0.71 0.188277
Target:  5'- aUCUcGCCGacgaacucggucuGUCGGCC-GCCGCCGgcGCg -3'
miRNA:   3'- -GGA-CGGC-------------CAGCCGGaCGGCGGUaaCG- -5'
24119 3' -60.3 NC_005263.2 + 44180 1.12 0.000171
Target:  5'- aCCUGCCGGUCGGCCUGCCGCCAUUGCc -3'
miRNA:   3'- -GGACGGCCAGCCGGACGGCGGUAACG- -5'
24119 3' -60.3 NC_005263.2 + 43451 0.66 0.403213
Target:  5'- cCCgcgcGCCGGcCuGCCcGUCGCCAUgaucGCg -3'
miRNA:   3'- -GGa---CGGCCaGcCGGaCGGCGGUAa---CG- -5'
24119 3' -60.3 NC_005263.2 + 43058 0.69 0.26327
Target:  5'- --cGCCGacGUCGGCCaauagucgGCCGCCGggccgGCu -3'
miRNA:   3'- ggaCGGC--CAGCCGGa-------CGGCGGUaa---CG- -5'
24119 3' -60.3 NC_005263.2 + 42502 0.68 0.335602
Target:  5'- aCUGCCGcaCGGCCU--CGCCG-UGCg -3'
miRNA:   3'- gGACGGCcaGCCGGAcgGCGGUaACG- -5'
24119 3' -60.3 NC_005263.2 + 42009 0.71 0.209478
Target:  5'- aCgUGCCGGcagugCGGCCgGCCgcGCCAagGCu -3'
miRNA:   3'- -GgACGGCCa----GCCGGaCGG--CGGUaaCG- -5'
24119 3' -60.3 NC_005263.2 + 41261 0.73 0.152707
Target:  5'- aCCUgucGCCGGUCGuGUC-GCCGUCGcUGCg -3'
miRNA:   3'- -GGA---CGGCCAGC-CGGaCGGCGGUaACG- -5'
24119 3' -60.3 NC_005263.2 + 39985 0.74 0.116468
Target:  5'- uCCUGCauaUgGGCCUGCCGCCGacgGCg -3'
miRNA:   3'- -GGACGgccAgCCGGACGGCGGUaa-CG- -5'
24119 3' -60.3 NC_005263.2 + 39722 0.72 0.169885
Target:  5'- gCUUcCUGGUCGGCCUGCCugcGCCAcUGa -3'
miRNA:   3'- -GGAcGGCCAGCCGGACGG---CGGUaACg -5'
24119 3' -60.3 NC_005263.2 + 38571 0.7 0.232115
Target:  5'- --cGCCGcGUCGGUcgCUGCCGCgCAcgGCc -3'
miRNA:   3'- ggaCGGC-CAGCCG--GACGGCG-GUaaCG- -5'
24119 3' -60.3 NC_005263.2 + 37910 0.75 0.109951
Target:  5'- cCCgagGCCGGcgaggcuUCGGCCUGCuCGCgAUUcGCg -3'
miRNA:   3'- -GGa--CGGCC-------AGCCGGACG-GCGgUAA-CG- -5'
24119 3' -60.3 NC_005263.2 + 36142 0.7 0.232115
Target:  5'- gCCUGCCguauacgugaGGUuggcgaCGGCCUGCgCGaCCggUGCg -3'
miRNA:   3'- -GGACGG----------CCA------GCCGGACG-GC-GGuaACG- -5'
24119 3' -60.3 NC_005263.2 + 33946 0.66 0.421413
Target:  5'- aCCgGCCGc-CGGCCcgaaGUCGCCAagGCg -3'
miRNA:   3'- -GGaCGGCcaGCCGGa---CGGCGGUaaCG- -5'
24119 3' -60.3 NC_005263.2 + 32687 0.71 0.204124
Target:  5'- aCCUguacgGCCGGcucacCGGCUUGCUGCCcgccgUGCg -3'
miRNA:   3'- -GGA-----CGGCCa----GCCGGACGGCGGua---ACG- -5'
24119 3' -60.3 NC_005263.2 + 31597 0.68 0.305037
Target:  5'- uUUGCCGGUUGGUCaUGCCggucgcgacgGCCGcgcgGCg -3'
miRNA:   3'- gGACGGCCAGCCGG-ACGG----------CGGUaa--CG- -5'
24119 3' -60.3 NC_005263.2 + 30520 0.69 0.26327
Target:  5'- cCCUGCgCGccUUGGCC-GCCGCCGUUcGUg -3'
miRNA:   3'- -GGACG-GCc-AGCCGGaCGGCGGUAA-CG- -5'
24119 3' -60.3 NC_005263.2 + 30347 0.71 0.209478
Target:  5'- gCgUGCCGaGcgCGGCCgcgcUGCCGCCGgcGCc -3'
miRNA:   3'- -GgACGGC-Ca-GCCGG----ACGGCGGUaaCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.