miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24119 3' -60.3 NC_005263.2 + 19110 0.79 0.054827
Target:  5'- aCUGCCGGUCGGCCgcGCCgagcgcaucGCCGggcgcUUGCg -3'
miRNA:   3'- gGACGGCCAGCCGGa-CGG---------CGGU-----AACG- -5'
24119 3' -60.3 NC_005263.2 + 20552 0.69 0.256778
Target:  5'- aCCUcGCCGcgacgcucGUgccCGGCCUGCCGgCcgUGCc -3'
miRNA:   3'- -GGA-CGGC--------CA---GCCGGACGGCgGuaACG- -5'
24119 3' -60.3 NC_005263.2 + 20723 0.71 0.19889
Target:  5'- --aGCCGGUCagcgcGCCgGCCGCCGccGCg -3'
miRNA:   3'- ggaCGGCCAGc----CGGaCGGCGGUaaCG- -5'
24119 3' -60.3 NC_005263.2 + 21056 0.66 0.430697
Target:  5'- uCCUGCCcGaCGGgCgGCCGCgCAUccUGCu -3'
miRNA:   3'- -GGACGGcCaGCCgGaCGGCG-GUA--ACG- -5'
24119 3' -60.3 NC_005263.2 + 21399 0.69 0.276653
Target:  5'- gCUGCCgcaGGcCGGCCUGCUcgGCgCAUuacgUGCg -3'
miRNA:   3'- gGACGG---CCaGCCGGACGG--CG-GUA----ACG- -5'
24119 3' -60.3 NC_005263.2 + 22493 0.66 0.449618
Target:  5'- --cGCCGGcggCGGCCgGCgGCgGUUcgGCg -3'
miRNA:   3'- ggaCGGCCa--GCCGGaCGgCGgUAA--CG- -5'
24119 3' -60.3 NC_005263.2 + 22711 0.67 0.368344
Target:  5'- gUCUGCCaGGUCgaGGCCUcGCgGCgCAUgagcGCa -3'
miRNA:   3'- -GGACGG-CCAG--CCGGA-CGgCG-GUAa---CG- -5'
24119 3' -60.3 NC_005263.2 + 23261 0.67 0.351703
Target:  5'- gCCgGCUGGcgcacCGGCa--CCGCCGUUGCc -3'
miRNA:   3'- -GGaCGGCCa----GCCGgacGGCGGUAACG- -5'
24119 3' -60.3 NC_005263.2 + 23564 0.71 0.204124
Target:  5'- gCCgccGCCGccCGcGCC-GCCGCCGUUGCc -3'
miRNA:   3'- -GGa--CGGCcaGC-CGGaCGGCGGUAACG- -5'
24119 3' -60.3 NC_005263.2 + 23802 0.66 0.394301
Target:  5'- cCCgUGCCGG-CGGCCgucuugaucGUCGCCGcgaaaGCg -3'
miRNA:   3'- -GG-ACGGCCaGCCGGa--------CGGCGGUaa---CG- -5'
24119 3' -60.3 NC_005263.2 + 24539 0.66 0.403213
Target:  5'- -gUGCgGGuUCGuGCCUGCCGgC--UGCg -3'
miRNA:   3'- ggACGgCC-AGC-CGGACGGCgGuaACG- -5'
24119 3' -60.3 NC_005263.2 + 24828 0.66 0.394301
Target:  5'- gCCUGUCcccaGGgcuuccaCGGCgUGCCGCCAgUGg -3'
miRNA:   3'- -GGACGG----CCa------GCCGgACGGCGGUaACg -5'
24119 3' -60.3 NC_005263.2 + 24984 0.68 0.312473
Target:  5'- -aUGCUGGcCGGCCUGgCCGCaaccggGUa -3'
miRNA:   3'- ggACGGCCaGCCGGAC-GGCGguaa--CG- -5'
24119 3' -60.3 NC_005263.2 + 25616 0.66 0.430697
Target:  5'- aCC-GCCGc-CGGCC-GCCGCCg--GCg -3'
miRNA:   3'- -GGaCGGCcaGCCGGaCGGCGGuaaCG- -5'
24119 3' -60.3 NC_005263.2 + 26002 0.66 0.4401
Target:  5'- gCgUGCCGG-CGGCa-GCCGUCAcgccuggugUGCc -3'
miRNA:   3'- -GgACGGCCaGCCGgaCGGCGGUa--------ACG- -5'
24119 3' -60.3 NC_005263.2 + 26323 0.67 0.343585
Target:  5'- --gGCCGGUCGGCgUGaagGUCgGUUGCg -3'
miRNA:   3'- ggaCGGCCAGCCGgACgg-CGG-UAACG- -5'
24119 3' -60.3 NC_005263.2 + 27294 0.68 0.334811
Target:  5'- aCCUGCCGcGcCGGCCaggaacuUGaC-CCAUUGCg -3'
miRNA:   3'- -GGACGGC-CaGCCGG-------ACgGcGGUAACG- -5'
24119 3' -60.3 NC_005263.2 + 27471 0.7 0.221116
Target:  5'- uUCUGCCGGaUCGaGCacaacggcggauugGCCGCC-UUGCa -3'
miRNA:   3'- -GGACGGCC-AGC-CGga------------CGGCGGuAACG- -5'
24119 3' -60.3 NC_005263.2 + 27797 0.67 0.351703
Target:  5'- --cGUCGGgaCGGCg-GCCGCCAUcGCg -3'
miRNA:   3'- ggaCGGCCa-GCCGgaCGGCGGUAaCG- -5'
24119 3' -60.3 NC_005263.2 + 29292 0.67 0.376866
Target:  5'- gCUGCaCGG-CGGCCggGUCGgCAU-GCg -3'
miRNA:   3'- gGACG-GCCaGCCGGa-CGGCgGUAaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.