Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24119 | 3' | -60.3 | NC_005263.2 | + | 173 | 0.67 | 0.385518 |
Target: 5'- uCCgcgcCCGGggCGaGCCcGCUGCCcgUGCg -3' miRNA: 3'- -GGac--GGCCa-GC-CGGaCGGCGGuaACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 14134 | 0.67 | 0.385518 |
Target: 5'- --aGCCGcagCGGCCagcgcgGCCGCCuugGCg -3' miRNA: 3'- ggaCGGCca-GCCGGa-----CGGCGGuaaCG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 17407 | 0.68 | 0.30064 |
Target: 5'- aCUGCCGcuacugcaaagcgaaGcCGGCCUGCcCGCgCAU-GCa -3' miRNA: 3'- gGACGGC---------------CaGCCGGACG-GCG-GUAaCG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 24539 | 0.66 | 0.403213 |
Target: 5'- -gUGCgGGuUCGuGCCUGCCGgC--UGCg -3' miRNA: 3'- ggACGgCC-AGC-CGGACGGCgGuaACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 31597 | 0.68 | 0.305037 |
Target: 5'- uUUGCCGGUUGGUCaUGCCggucgcgacgGCCGcgcgGCg -3' miRNA: 3'- gGACGGCCAGCCGG-ACGG----------CGGUaa--CG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 2400 | 0.67 | 0.368344 |
Target: 5'- --cGCCGG-CGGUCgcuugGUCGCCGUacaGCg -3' miRNA: 3'- ggaCGGCCaGCCGGa----CGGCGGUAa--CG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 21056 | 0.66 | 0.430697 |
Target: 5'- uCCUGCCcGaCGGgCgGCCGCgCAUccUGCu -3' miRNA: 3'- -GGACGGcCaGCCgGaCGGCG-GUA--ACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 13006 | 0.68 | 0.327756 |
Target: 5'- --gGCCGGUCGGCgUGauGCCGaguaGCu -3' miRNA: 3'- ggaCGGCCAGCCGgACggCGGUaa--CG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 13758 | 0.67 | 0.351703 |
Target: 5'- gCCagGCCGGaugugUCGGCUuucucuuucgUGCCGCCGaucGCu -3' miRNA: 3'- -GGa-CGGCC-----AGCCGG----------ACGGCGGUaa-CG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 29292 | 0.67 | 0.376866 |
Target: 5'- gCUGCaCGG-CGGCCggGUCGgCAU-GCg -3' miRNA: 3'- gGACG-GCCaGCCGGa-CGGCgGUAaCG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 24828 | 0.66 | 0.394301 |
Target: 5'- gCCUGUCcccaGGgcuuccaCGGCgUGCCGCCAgUGg -3' miRNA: 3'- -GGACGG----CCa------GCCGgACGGCGGUaACg -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 26002 | 0.66 | 0.4401 |
Target: 5'- gCgUGCCGG-CGGCa-GCCGUCAcgccuggugUGCc -3' miRNA: 3'- -GgACGGCCaGCCGgaCGGCGGUa--------ACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 22711 | 0.67 | 0.368344 |
Target: 5'- gUCUGCCaGGUCgaGGCCUcGCgGCgCAUgagcGCa -3' miRNA: 3'- -GGACGG-CCAG--CCGGA-CGgCG-GUAa---CG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 23261 | 0.67 | 0.351703 |
Target: 5'- gCCgGCUGGcgcacCGGCa--CCGCCGUUGCc -3' miRNA: 3'- -GGaCGGCCa----GCCGgacGGCGGUAACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 26323 | 0.67 | 0.343585 |
Target: 5'- --gGCCGGUCGGCgUGaagGUCgGUUGCg -3' miRNA: 3'- ggaCGGCCAGCCGgACgg-CGG-UAACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 27294 | 0.68 | 0.334811 |
Target: 5'- aCCUGCCGcGcCGGCCaggaacuUGaC-CCAUUGCg -3' miRNA: 3'- -GGACGGC-CaGCCGG-------ACgGcGGUAACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 22493 | 0.66 | 0.449618 |
Target: 5'- --cGCCGGcggCGGCCgGCgGCgGUUcgGCg -3' miRNA: 3'- ggaCGGCCa--GCCGGaCGgCGgUAA--CG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 21399 | 0.69 | 0.276653 |
Target: 5'- gCUGCCgcaGGcCGGCCUGCUcgGCgCAUuacgUGCg -3' miRNA: 3'- gGACGG---CCaGCCGGACGG--CG-GUA----ACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 2854 | 0.69 | 0.290573 |
Target: 5'- -aUGCgGGcCGGCCcGcCCGCCAgUUGUa -3' miRNA: 3'- ggACGgCCaGCCGGaC-GGCGGU-AACG- -5' |
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24119 | 3' | -60.3 | NC_005263.2 | + | 3402 | 0.66 | 0.394301 |
Target: 5'- gCUGCa-GUCGGCC-GCCGaCGUgUGCg -3' miRNA: 3'- gGACGgcCAGCCGGaCGGCgGUA-ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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