Results 21 - 36 of 36 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 29541 | 0.66 | 0.84918 |
Target: 5'- -gGCCGgGACGCC---ACCGGUgCCGg -3' miRNA: 3'- gaUGGUgCUGUGGuacUGGUUAgGGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 30366 | 0.7 | 0.629849 |
Target: 5'- gCUGCCGcCGGCGCCGaGugCGAgCCCc -3' miRNA: 3'- -GAUGGU-GCUGUGGUaCugGUUaGGGc -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 31359 | 0.66 | 0.84918 |
Target: 5'- aUGCCuuuCGACAgCGUGACUGAcgCCGg -3' miRNA: 3'- gAUGGu--GCUGUgGUACUGGUUagGGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 33750 | 0.68 | 0.7515 |
Target: 5'- -aACCACGugG---UGACCGgaAUCCCGa -3' miRNA: 3'- gaUGGUGCugUgguACUGGU--UAGGGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 34070 | 0.66 | 0.812394 |
Target: 5'- ---aCGCGGCGcCCGUGGCCGaaccGUCgCCGu -3' miRNA: 3'- gaugGUGCUGU-GGUACUGGU----UAG-GGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 35028 | 0.68 | 0.7515 |
Target: 5'- gCUGCCGucCGACACCGgcaGACacg-CCCGu -3' miRNA: 3'- -GAUGGU--GCUGUGGUa--CUGguuaGGGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 37256 | 0.68 | 0.730053 |
Target: 5'- -cGCCGCGACGCCGUaGCCcgcaCCa -3' miRNA: 3'- gaUGGUGCUGUGGUAcUGGuuagGGc -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 39168 | 0.66 | 0.831226 |
Target: 5'- -cGCgACGGCAUCGguauGCCGAUCaCCGa -3' miRNA: 3'- gaUGgUGCUGUGGUac--UGGUUAG-GGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 39222 | 0.66 | 0.857804 |
Target: 5'- uUGCgCGCGcuGCACCGgcagcacgGGCCGcguAUCCCGu -3' miRNA: 3'- gAUG-GUGC--UGUGGUa-------CUGGU---UAGGGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 41853 | 0.71 | 0.573711 |
Target: 5'- gCUGCC-CGACGgCAcGACCGcgCCUGg -3' miRNA: 3'- -GAUGGuGCUGUgGUaCUGGUuaGGGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 44215 | 1.09 | 0.001854 |
Target: 5'- gCUACCACGACACCAUGACCAAUCCCGu -3' miRNA: 3'- -GAUGGUGCUGUGGUACUGGUUAGGGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 44256 | 0.67 | 0.772438 |
Target: 5'- ---aCugGACGCCGgcUGACCAc-CCCGa -3' miRNA: 3'- gaugGugCUGUGGU--ACUGGUuaGGGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 45002 | 0.72 | 0.486874 |
Target: 5'- -cGCgCAUGGCGCCGUGGCuCGcgaaugauGUCCCGa -3' miRNA: 3'- gaUG-GUGCUGUGGUACUG-GU--------UAGGGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 45310 | 0.67 | 0.762039 |
Target: 5'- gUGCuCAUGGCACUc-GACCAG-CCCGg -3' miRNA: 3'- gAUG-GUGCUGUGGuaCUGGUUaGGGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 45530 | 0.71 | 0.529642 |
Target: 5'- aCUGCCugGACgGCCGUGauuGCCGaucGUCUCGc -3' miRNA: 3'- -GAUGGugCUG-UGGUAC---UGGU---UAGGGC- -5' |
|||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 47510 | 0.73 | 0.455898 |
Target: 5'- aCUGCCuacguuacugAUGGCGCCAUuGCCGAUCUCGc -3' miRNA: 3'- -GAUGG----------UGCUGUGGUAcUGGUUAGGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home