miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24119 5' -52.4 NC_005263.2 + 2284 0.67 0.772438
Target:  5'- -cGCCGuCGGCaggucgugcGCCGUGGCCGGcacgCCCGc -3'
miRNA:   3'- gaUGGU-GCUG---------UGGUACUGGUUa---GGGC- -5'
24119 5' -52.4 NC_005263.2 + 3110 0.85 0.07966
Target:  5'- -aGCCACGGCGCCAUGcgcGCCucGAUCCCGg -3'
miRNA:   3'- gaUGGUGCUGUGGUAC---UGG--UUAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 3425 0.68 0.7515
Target:  5'- aCUGCUGCGGCGCCGUcgcGACCugguugaCCUGc -3'
miRNA:   3'- -GAUGGUGCUGUGGUA---CUGGuua----GGGC- -5'
24119 5' -52.4 NC_005263.2 + 4853 0.68 0.740835
Target:  5'- gUACgCGCG-CGCCGUG-CCGAUgCCGc -3'
miRNA:   3'- gAUG-GUGCuGUGGUACuGGUUAgGGC- -5'
24119 5' -52.4 NC_005263.2 + 4958 0.67 0.762039
Target:  5'- gUACCAgGGCGCaAUGGCCGAgCCUu -3'
miRNA:   3'- gAUGGUgCUGUGgUACUGGUUaGGGc -5'
24119 5' -52.4 NC_005263.2 + 8056 0.7 0.618577
Target:  5'- -cGCCGCGcgaguuCCGUGAUCAGUCCUa -3'
miRNA:   3'- gaUGGUGCugu---GGUACUGGUUAGGGc -5'
24119 5' -52.4 NC_005263.2 + 10565 0.74 0.388047
Target:  5'- --uUCACGugGCCGUGGCCGGcggCCCa -3'
miRNA:   3'- gauGGUGCugUGGUACUGGUUa--GGGc -5'
24119 5' -52.4 NC_005263.2 + 15484 0.66 0.857804
Target:  5'- gCUGCgGCGGCGCgGUGAgCAucagCaCCGg -3'
miRNA:   3'- -GAUGgUGCUGUGgUACUgGUua--G-GGC- -5'
24119 5' -52.4 NC_005263.2 + 15972 0.69 0.686023
Target:  5'- -cGCCGCGAUuugagcaggUCGUGAUCGAUCUCGa -3'
miRNA:   3'- gaUGGUGCUGu--------GGUACUGGUUAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 18565 0.7 0.641123
Target:  5'- -aGCC-CGGCACCgGUGGC--GUCCCGg -3'
miRNA:   3'- gaUGGuGCUGUGG-UACUGguUAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 19300 0.67 0.802674
Target:  5'- --gUCACGGuCACCGUGACgcg-CCCGg -3'
miRNA:   3'- gauGGUGCU-GUGGUACUGguuaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 20344 0.67 0.762039
Target:  5'- cCUGCCGCcgcaccucgggGGCGCgCAUGGCUGAUCgCGc -3'
miRNA:   3'- -GAUGGUG-----------CUGUG-GUACUGGUUAGgGC- -5'
24119 5' -52.4 NC_005263.2 + 20556 0.7 0.59608
Target:  5'- -cGCCGCGACGCuCGUGcCCGG-CCUGc -3'
miRNA:   3'- gaUGGUGCUGUG-GUACuGGUUaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 21469 0.67 0.762039
Target:  5'- -cGCUGCGGCGCCAcUGGCaAAUCCgGc -3'
miRNA:   3'- gaUGGUGCUGUGGU-ACUGgUUAGGgC- -5'
24119 5' -52.4 NC_005263.2 + 21738 0.67 0.802674
Target:  5'- aUGCgCGCGugauaagaucGCGCgCAUGACCAcgaccaacGUCCCGc -3'
miRNA:   3'- gAUG-GUGC----------UGUG-GUACUGGU--------UAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 22485 0.7 0.618577
Target:  5'- -aACUACGGCGCgAcGAacuauCCGAUCCCGg -3'
miRNA:   3'- gaUGGUGCUGUGgUaCU-----GGUUAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 24132 0.7 0.584874
Target:  5'- -cACCACGGCAC--UGACCGG-CCUGa -3'
miRNA:   3'- gaUGGUGCUGUGguACUGGUUaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 25218 0.78 0.239915
Target:  5'- -cGgCACGaACGCCGUG-CCGAUCCCGg -3'
miRNA:   3'- gaUgGUGC-UGUGGUACuGGUUAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 26039 0.69 0.697142
Target:  5'- -cACCACGACACCcggGAUC-GUCgCGg -3'
miRNA:   3'- gaUGGUGCUGUGGua-CUGGuUAGgGC- -5'
24119 5' -52.4 NC_005263.2 + 28245 0.67 0.792767
Target:  5'- -cGCCGCGcuCGCCGUGACCuugUUCGc -3'
miRNA:   3'- gaUGGUGCu-GUGGUACUGGuuaGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.