miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24119 5' -52.4 NC_005263.2 + 18565 0.7 0.641123
Target:  5'- -aGCC-CGGCACCgGUGGC--GUCCCGg -3'
miRNA:   3'- gaUGGuGCUGUGG-UACUGguUAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 20556 0.7 0.59608
Target:  5'- -cGCCGCGACGCuCGUGcCCGG-CCUGc -3'
miRNA:   3'- gaUGGUGCUGUG-GUACuGGUUaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 41853 0.71 0.573711
Target:  5'- gCUGCC-CGACGgCAcGACCGcgCCUGg -3'
miRNA:   3'- -GAUGGuGCUGUgGUaCUGGUuaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 45002 0.72 0.486874
Target:  5'- -cGCgCAUGGCGCCGUGGCuCGcgaaugauGUCCCGa -3'
miRNA:   3'- gaUG-GUGCUGUGGUACUG-GU--------UAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 33750 0.68 0.7515
Target:  5'- -aACCACGugG---UGACCGgaAUCCCGa -3'
miRNA:   3'- gaUGGUGCugUgguACUGGU--UAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 4853 0.68 0.740835
Target:  5'- gUACgCGCG-CGCCGUG-CCGAUgCCGc -3'
miRNA:   3'- gAUG-GUGCuGUGGUACuGGUUAgGGC- -5'
24119 5' -52.4 NC_005263.2 + 15484 0.66 0.857804
Target:  5'- gCUGCgGCGGCGCgGUGAgCAucagCaCCGg -3'
miRNA:   3'- -GAUGgUGCUGUGgUACUgGUua--G-GGC- -5'
24119 5' -52.4 NC_005263.2 + 39168 0.66 0.831226
Target:  5'- -cGCgACGGCAUCGguauGCCGAUCaCCGa -3'
miRNA:   3'- gaUGgUGCUGUGGUac--UGGUUAG-GGC- -5'
24119 5' -52.4 NC_005263.2 + 45310 0.67 0.762039
Target:  5'- gUGCuCAUGGCACUc-GACCAG-CCCGg -3'
miRNA:   3'- gAUG-GUGCUGUGGuaCUGGUUaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 4958 0.67 0.762039
Target:  5'- gUACCAgGGCGCaAUGGCCGAgCCUu -3'
miRNA:   3'- gAUGGUgCUGUGgUACUGGUUaGGGc -5'
24119 5' -52.4 NC_005263.2 + 35028 0.68 0.7515
Target:  5'- gCUGCCGucCGACACCGgcaGACacg-CCCGu -3'
miRNA:   3'- -GAUGGU--GCUGUGGUa--CUGguuaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 15972 0.69 0.686023
Target:  5'- -cGCCGCGAUuugagcaggUCGUGAUCGAUCUCGa -3'
miRNA:   3'- gaUGGUGCUGu--------GGUACUGGUUAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 2284 0.67 0.772438
Target:  5'- -cGCCGuCGGCaggucgugcGCCGUGGCCGGcacgCCCGc -3'
miRNA:   3'- gaUGGU-GCUG---------UGGUACUGGUUa---GGGC- -5'
24119 5' -52.4 NC_005263.2 + 26039 0.69 0.697142
Target:  5'- -cACCACGACACCcggGAUC-GUCgCGg -3'
miRNA:   3'- gaUGGUGCUGUGGua-CUGGuUAGgGC- -5'
24119 5' -52.4 NC_005263.2 + 3425 0.68 0.7515
Target:  5'- aCUGCUGCGGCGCCGUcgcGACCugguugaCCUGc -3'
miRNA:   3'- -GAUGGUGCUGUGGUA---CUGGuua----GGGC- -5'
24119 5' -52.4 NC_005263.2 + 44256 0.67 0.772438
Target:  5'- ---aCugGACGCCGgcUGACCAc-CCCGa -3'
miRNA:   3'- gaugGugCUGUGGU--ACUGGUuaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 39222 0.66 0.857804
Target:  5'- uUGCgCGCGcuGCACCGgcagcacgGGCCGcguAUCCCGu -3'
miRNA:   3'- gAUG-GUGC--UGUGGUa-------CUGGU---UAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 37256 0.68 0.730053
Target:  5'- -cGCCGCGACGCCGUaGCCcgcaCCa -3'
miRNA:   3'- gaUGGUGCUGUGGUAcUGGuuagGGc -5'
24119 5' -52.4 NC_005263.2 + 30366 0.7 0.629849
Target:  5'- gCUGCCGcCGGCGCCGaGugCGAgCCCc -3'
miRNA:   3'- -GAUGGU-GCUGUGGUaCugGUUaGGGc -5'
24119 5' -52.4 NC_005263.2 + 25218 0.78 0.239915
Target:  5'- -cGgCACGaACGCCGUG-CCGAUCCCGg -3'
miRNA:   3'- gaUgGUGC-UGUGGUACuGGUUAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.