miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24119 5' -52.4 NC_005263.2 + 31359 0.66 0.84918
Target:  5'- aUGCCuuuCGACAgCGUGACUGAcgCCGg -3'
miRNA:   3'- gAUGGu--GCUGUgGUACUGGUUagGGC- -5'
24119 5' -52.4 NC_005263.2 + 44215 1.09 0.001854
Target:  5'- gCUACCACGACACCAUGACCAAUCCCGu -3'
miRNA:   3'- -GAUGGUGCUGUGGUACUGGUUAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 3110 0.85 0.07966
Target:  5'- -aGCCACGGCGCCAUGcgcGCCucGAUCCCGg -3'
miRNA:   3'- gaUGGUGCUGUGGUAC---UGG--UUAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 25218 0.78 0.239915
Target:  5'- -cGgCACGaACGCCGUG-CCGAUCCCGg -3'
miRNA:   3'- gaUgGUGC-UGUGGUACuGGUUAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 10565 0.74 0.388047
Target:  5'- --uUCACGugGCCGUGGCCGGcggCCCa -3'
miRNA:   3'- gauGGUGCugUGGUACUGGUUa--GGGc -5'
24119 5' -52.4 NC_005263.2 + 47510 0.73 0.455898
Target:  5'- aCUGCCuacguuacugAUGGCGCCAUuGCCGAUCUCGc -3'
miRNA:   3'- -GAUGG----------UGCUGUGGUAcUGGUUAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 45530 0.71 0.529642
Target:  5'- aCUGCCugGACgGCCGUGauuGCCGaucGUCUCGc -3'
miRNA:   3'- -GAUGGugCUG-UGGUAC---UGGU---UAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 24132 0.7 0.584874
Target:  5'- -cACCACGGCAC--UGACCGG-CCUGa -3'
miRNA:   3'- gaUGGUGCUGUGguACUGGUUaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 8056 0.7 0.618577
Target:  5'- -cGCCGCGcgaguuCCGUGAUCAGUCCUa -3'
miRNA:   3'- gaUGGUGCugu---GGUACUGGUUAGGGc -5'
24119 5' -52.4 NC_005263.2 + 22485 0.7 0.618577
Target:  5'- -aACUACGGCGCgAcGAacuauCCGAUCCCGg -3'
miRNA:   3'- gaUGGUGCUGUGgUaCU-----GGUUAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 29541 0.66 0.84918
Target:  5'- -gGCCGgGACGCC---ACCGGUgCCGg -3'
miRNA:   3'- gaUGGUgCUGUGGuacUGGUUAgGGC- -5'
24119 5' -52.4 NC_005263.2 + 34070 0.66 0.812394
Target:  5'- ---aCGCGGCGcCCGUGGCCGaaccGUCgCCGu -3'
miRNA:   3'- gaugGUGCUGU-GGUACUGGU----UAG-GGC- -5'
24119 5' -52.4 NC_005263.2 + 21738 0.67 0.802674
Target:  5'- aUGCgCGCGugauaagaucGCGCgCAUGACCAcgaccaacGUCCCGc -3'
miRNA:   3'- gAUG-GUGC----------UGUG-GUACUGGU--------UAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 19300 0.67 0.802674
Target:  5'- --gUCACGGuCACCGUGACgcg-CCCGg -3'
miRNA:   3'- gauGGUGCU-GUGGUACUGguuaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 28245 0.67 0.792767
Target:  5'- -cGCCGCGcuCGCCGUGACCuugUUCGc -3'
miRNA:   3'- gaUGGUGCu-GUGGUACUGGuuaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 21469 0.67 0.762039
Target:  5'- -cGCUGCGGCGCCAcUGGCaAAUCCgGc -3'
miRNA:   3'- gaUGGUGCUGUGGU-ACUGgUUAGGgC- -5'
24119 5' -52.4 NC_005263.2 + 20344 0.67 0.762039
Target:  5'- cCUGCCGCcgcaccucgggGGCGCgCAUGGCUGAUCgCGc -3'
miRNA:   3'- -GAUGGUG-----------CUGUG-GUACUGGUUAGgGC- -5'
24119 5' -52.4 NC_005263.2 + 39222 0.66 0.857804
Target:  5'- uUGCgCGCGcuGCACCGgcagcacgGGCCGcguAUCCCGu -3'
miRNA:   3'- gAUG-GUGC--UGUGGUa-------CUGGU---UAGGGC- -5'
24119 5' -52.4 NC_005263.2 + 41853 0.71 0.573711
Target:  5'- gCUGCC-CGACGgCAcGACCGcgCCUGg -3'
miRNA:   3'- -GAUGGuGCUGUgGUaCUGGUuaGGGC- -5'
24119 5' -52.4 NC_005263.2 + 20556 0.7 0.59608
Target:  5'- -cGCCGCGACGCuCGUGcCCGG-CCUGc -3'
miRNA:   3'- gaUGGUGCUGUG-GUACuGGUUaGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.