Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24119 | 5' | -52.4 | NC_005263.2 | + | 44215 | 1.09 | 0.001854 |
Target: 5'- gCUACCACGACACCAUGACCAAUCCCGu -3' miRNA: 3'- -GAUGGUGCUGUGGUACUGGUUAGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 3110 | 0.85 | 0.07966 |
Target: 5'- -aGCCACGGCGCCAUGcgcGCCucGAUCCCGg -3' miRNA: 3'- gaUGGUGCUGUGGUAC---UGG--UUAGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 25218 | 0.78 | 0.239915 |
Target: 5'- -cGgCACGaACGCCGUG-CCGAUCCCGg -3' miRNA: 3'- gaUgGUGC-UGUGGUACuGGUUAGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 10565 | 0.74 | 0.388047 |
Target: 5'- --uUCACGugGCCGUGGCCGGcggCCCa -3' miRNA: 3'- gauGGUGCugUGGUACUGGUUa--GGGc -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 47510 | 0.73 | 0.455898 |
Target: 5'- aCUGCCuacguuacugAUGGCGCCAUuGCCGAUCUCGc -3' miRNA: 3'- -GAUGG----------UGCUGUGGUAcUGGUUAGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 45002 | 0.72 | 0.486874 |
Target: 5'- -cGCgCAUGGCGCCGUGGCuCGcgaaugauGUCCCGa -3' miRNA: 3'- gaUG-GUGCUGUGGUACUG-GU--------UAGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 45530 | 0.71 | 0.529642 |
Target: 5'- aCUGCCugGACgGCCGUGauuGCCGaucGUCUCGc -3' miRNA: 3'- -GAUGGugCUG-UGGUAC---UGGU---UAGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 41853 | 0.71 | 0.573711 |
Target: 5'- gCUGCC-CGACGgCAcGACCGcgCCUGg -3' miRNA: 3'- -GAUGGuGCUGUgGUaCUGGUuaGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 24132 | 0.7 | 0.584874 |
Target: 5'- -cACCACGGCAC--UGACCGG-CCUGa -3' miRNA: 3'- gaUGGUGCUGUGguACUGGUUaGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 20556 | 0.7 | 0.59608 |
Target: 5'- -cGCCGCGACGCuCGUGcCCGG-CCUGc -3' miRNA: 3'- gaUGGUGCUGUG-GUACuGGUUaGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 22485 | 0.7 | 0.618577 |
Target: 5'- -aACUACGGCGCgAcGAacuauCCGAUCCCGg -3' miRNA: 3'- gaUGGUGCUGUGgUaCU-----GGUUAGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 8056 | 0.7 | 0.618577 |
Target: 5'- -cGCCGCGcgaguuCCGUGAUCAGUCCUa -3' miRNA: 3'- gaUGGUGCugu---GGUACUGGUUAGGGc -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 30366 | 0.7 | 0.629849 |
Target: 5'- gCUGCCGcCGGCGCCGaGugCGAgCCCc -3' miRNA: 3'- -GAUGGU-GCUGUGGUaCugGUUaGGGc -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 18565 | 0.7 | 0.641123 |
Target: 5'- -aGCC-CGGCACCgGUGGC--GUCCCGg -3' miRNA: 3'- gaUGGuGCUGUGG-UACUGguUAGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 15972 | 0.69 | 0.686023 |
Target: 5'- -cGCCGCGAUuugagcaggUCGUGAUCGAUCUCGa -3' miRNA: 3'- gaUGGUGCUGu--------GGUACUGGUUAGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 26039 | 0.69 | 0.697142 |
Target: 5'- -cACCACGACACCcggGAUC-GUCgCGg -3' miRNA: 3'- gaUGGUGCUGUGGua-CUGGuUAGgGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 37256 | 0.68 | 0.730053 |
Target: 5'- -cGCCGCGACGCCGUaGCCcgcaCCa -3' miRNA: 3'- gaUGGUGCUGUGGUAcUGGuuagGGc -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 4853 | 0.68 | 0.740835 |
Target: 5'- gUACgCGCG-CGCCGUG-CCGAUgCCGc -3' miRNA: 3'- gAUG-GUGCuGUGGUACuGGUUAgGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 35028 | 0.68 | 0.7515 |
Target: 5'- gCUGCCGucCGACACCGgcaGACacg-CCCGu -3' miRNA: 3'- -GAUGGU--GCUGUGGUa--CUGguuaGGGC- -5' |
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24119 | 5' | -52.4 | NC_005263.2 | + | 33750 | 0.68 | 0.7515 |
Target: 5'- -aACCACGugG---UGACCGgaAUCCCGa -3' miRNA: 3'- gaUGGUGCugUgguACUGGU--UAGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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