miRNA display CGI


Results 41 - 60 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 3' -54.8 NC_005263.2 + 38384 0.67 0.635716
Target:  5'- --cUguGGCGaacGAGCgcaaGCGCGCCGCa -3'
miRNA:   3'- cuaAguCCGCgucUUCG----UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 46083 0.67 0.635716
Target:  5'- ---gCGGGCGCcGuuauGCGC-CGCUGCg -3'
miRNA:   3'- cuaaGUCCGCGuCuu--CGUGuGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 25538 0.67 0.635716
Target:  5'- -----uGGCGCAG-AGCGCACGaucaGCu -3'
miRNA:   3'- cuaaguCCGCGUCuUCGUGUGCgg--CG- -5'
24120 3' -54.8 NC_005263.2 + 6252 0.67 0.635716
Target:  5'- ---cCAGGCGCGGucGUGC-CGUCGg -3'
miRNA:   3'- cuaaGUCCGCGUCuuCGUGuGCGGCg -5'
24120 3' -54.8 NC_005263.2 + 38179 0.67 0.628966
Target:  5'- ---cCGGGCGCcGAGGacaACgaggaagaaggcccgACGCCGCg -3'
miRNA:   3'- cuaaGUCCGCGuCUUCg--UG---------------UGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 27941 0.67 0.628966
Target:  5'- --gUCAGGUGCAGuAgccguagaagugcccGGCGCGacgGCCGUa -3'
miRNA:   3'- cuaAGUCCGCGUC-U---------------UCGUGUg--CGGCG- -5'
24120 3' -54.8 NC_005263.2 + 22101 0.67 0.624466
Target:  5'- ---cCAGGCGUGacGGCugccgccgGCACGCUGCa -3'
miRNA:   3'- cuaaGUCCGCGUcuUCG--------UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 18265 0.67 0.621092
Target:  5'- cGAUcgCAGGCGUuccGGGCgaugcgcucgucguGCGCGCUGCa -3'
miRNA:   3'- -CUAa-GUCCGCGuc-UUCG--------------UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 1114 0.67 0.613222
Target:  5'- ---gCAGucGCGCGcGAAGUcCGCGCCGUg -3'
miRNA:   3'- cuaaGUC--CGCGU-CUUCGuGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 5931 0.67 0.613222
Target:  5'- --cUCGGGCGU--GAGCGuCAUGUCGUg -3'
miRNA:   3'- cuaAGUCCGCGucUUCGU-GUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 38526 0.67 0.613222
Target:  5'- ---gCAGGuCGCcaAGGgcAGCgaGCGCGCCGCc -3'
miRNA:   3'- cuaaGUCC-GCG--UCU--UCG--UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 11776 0.67 0.613222
Target:  5'- --cUCGGGCGguGcauaucgcauGGCGCaggACGUCGCg -3'
miRNA:   3'- cuaAGUCCGCguCu---------UCGUG---UGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 20728 0.67 0.601997
Target:  5'- --gUCAGcGCGcCGGccGCcgcCGCGCCGCu -3'
miRNA:   3'- cuaAGUC-CGC-GUCuuCGu--GUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 38574 0.67 0.601997
Target:  5'- cGcgUCGGuCGCuGccGCGCACGgCCGCa -3'
miRNA:   3'- -CuaAGUCcGCGuCuuCGUGUGC-GGCG- -5'
24120 3' -54.8 NC_005263.2 + 10253 0.67 0.601997
Target:  5'- gGAUUC-GGCGCAcGcGGUucgcgaaACGCCGCg -3'
miRNA:   3'- -CUAAGuCCGCGU-CuUCGug-----UGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 31737 0.67 0.601997
Target:  5'- --aUCAGGcCGCcgccGAGCgACGCGgCCGCg -3'
miRNA:   3'- cuaAGUCC-GCGuc--UUCG-UGUGC-GGCG- -5'
24120 3' -54.8 NC_005263.2 + 46932 0.67 0.601997
Target:  5'- ------cGCGCAgcacGAGGCACAaguCGCCGCg -3'
miRNA:   3'- cuaagucCGCGU----CUUCGUGU---GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 41779 0.67 0.590797
Target:  5'- --aUC-GGCGCGGgcGacuCGCGCGCCGg -3'
miRNA:   3'- cuaAGuCCGCGUCuuC---GUGUGCGGCg -5'
24120 3' -54.8 NC_005263.2 + 23265 0.68 0.568518
Target:  5'- ---gCuGGCGCAccGGCAC-CGCCGUu -3'
miRNA:   3'- cuaaGuCCGCGUcuUCGUGuGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 45636 0.68 0.557454
Target:  5'- cGAUg-AGGCGCuccucGAGGUgcuugccgaGCugGCCGCg -3'
miRNA:   3'- -CUAagUCCGCGu----CUUCG---------UGugCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.