miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 3' -54.8 NC_005263.2 + 16330 0.66 0.679459
Target:  5'- ----gAGGCGCAaaaaaaacgcuucGAcgagacgaAGCGCGCGgCCGCg -3'
miRNA:   3'- cuaagUCCGCGU-------------CU--------UCGUGUGC-GGCG- -5'
24120 3' -54.8 NC_005263.2 + 47095 0.66 0.669403
Target:  5'- ----aAGGCGgaAGcAGCcaACACGCCGCc -3'
miRNA:   3'- cuaagUCCGCg-UCuUCG--UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 13808 0.66 0.669403
Target:  5'- ---cCAGGUGC-GAAuGCACuCGuCCGCg -3'
miRNA:   3'- cuaaGUCCGCGuCUU-CGUGuGC-GGCG- -5'
24120 3' -54.8 NC_005263.2 + 10732 0.66 0.669403
Target:  5'- ---cCAGGgcgaCGCAGAcucgAGCGCAUcgagcacgGCCGCg -3'
miRNA:   3'- cuaaGUCC----GCGUCU----UCGUGUG--------CGGCG- -5'
24120 3' -54.8 NC_005263.2 + 34484 0.66 0.669403
Target:  5'- --aUCAGGCGUucGGccGCGCGCacCCGUa -3'
miRNA:   3'- cuaAGUCCGCG--UCuuCGUGUGc-GGCG- -5'
24120 3' -54.8 NC_005263.2 + 26653 0.66 0.669403
Target:  5'- aGUUCGGGCcguucCAGAuacGCGCGacgGCCGCc -3'
miRNA:   3'- cUAAGUCCGc----GUCUu--CGUGUg--CGGCG- -5'
24120 3' -54.8 NC_005263.2 + 18447 0.66 0.658196
Target:  5'- --cUCgAGGUGCGcguGAAGCAgcCGCGCgGCu -3'
miRNA:   3'- cuaAG-UCCGCGU---CUUCGU--GUGCGgCG- -5'
24120 3' -54.8 NC_005263.2 + 47947 0.66 0.658196
Target:  5'- ---cCGGGCGCGGAu-CGCGUGCuCGCa -3'
miRNA:   3'- cuaaGUCCGCGUCUucGUGUGCG-GCG- -5'
24120 3' -54.8 NC_005263.2 + 18404 0.66 0.658196
Target:  5'- -----cGGC-CAGAAGUGCuACGCCGUc -3'
miRNA:   3'- cuaaguCCGcGUCUUCGUG-UGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 11875 0.66 0.658196
Target:  5'- ---gCAGGUGCucGGGCuCGCGCCGa -3'
miRNA:   3'- cuaaGUCCGCGucUUCGuGUGCGGCg -5'
24120 3' -54.8 NC_005263.2 + 10851 0.66 0.658196
Target:  5'- uGGUgCGGGCuacggcgucgcgGCGGAacucggcaccGGCGCGCGUCGUg -3'
miRNA:   3'- -CUAaGUCCG------------CGUCU----------UCGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 18116 0.66 0.658196
Target:  5'- aAUUCAucGGCGCGcuGGCACugG-CGCu -3'
miRNA:   3'- cUAAGU--CCGCGUcuUCGUGugCgGCG- -5'
24120 3' -54.8 NC_005263.2 + 12108 0.66 0.657073
Target:  5'- ---gCAuGCGCAGcGGCGCGCGCgccauuaCGCg -3'
miRNA:   3'- cuaaGUcCGCGUCuUCGUGUGCG-------GCG- -5'
24120 3' -54.8 NC_005263.2 + 3310 0.66 0.654828
Target:  5'- ----uGGGCGCGGccgcGCgguguucaacgucuGCGCGCCGCc -3'
miRNA:   3'- cuaagUCCGCGUCuu--CG--------------UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 41393 0.66 0.646963
Target:  5'- --gUguGGCGCucGAGCAUGCGCC-Cg -3'
miRNA:   3'- cuaAguCCGCGucUUCGUGUGCGGcG- -5'
24120 3' -54.8 NC_005263.2 + 1270 0.66 0.646963
Target:  5'- --cUCcuuGGCGCGccgccuGGCGCGCGuuGCg -3'
miRNA:   3'- cuaAGu--CCGCGUcu----UCGUGUGCggCG- -5'
24120 3' -54.8 NC_005263.2 + 34517 0.66 0.646963
Target:  5'- aGAUcaaAGGCGacgacCAGAucauGgACACGCCGCu -3'
miRNA:   3'- -CUAag-UCCGC-----GUCUu---CgUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 46846 0.66 0.646963
Target:  5'- ---gCGGcGCGCcaAGGAGCACGucaUGCCGUu -3'
miRNA:   3'- cuaaGUC-CGCG--UCUUCGUGU---GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 5742 0.66 0.646963
Target:  5'- -uUUCGGGaucaauucgcgcUGCAGcAGCACGCGauaCGCu -3'
miRNA:   3'- cuAAGUCC------------GCGUCuUCGUGUGCg--GCG- -5'
24120 3' -54.8 NC_005263.2 + 41683 0.66 0.646963
Target:  5'- --gUCGGGCGCGGAcuGCG---GCCGUa -3'
miRNA:   3'- cuaAGUCCGCGUCUu-CGUgugCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.