miRNA display CGI


Results 21 - 40 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 3' -54.8 NC_005263.2 + 22728 0.72 0.347916
Target:  5'- --cUCGcGGCGCAuGAGCGCACcgaucagGCCGCc -3'
miRNA:   3'- cuaAGU-CCGCGUcUUCGUGUG-------CGGCG- -5'
24120 3' -54.8 NC_005263.2 + 28966 0.72 0.34877
Target:  5'- --aUCGGuGuCGCGGAauucgGGCGCAUGCUGCu -3'
miRNA:   3'- cuaAGUC-C-GCGUCU-----UCGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 42047 0.72 0.357386
Target:  5'- --gUCGGcGCGCGuGAAGC--GCGCCGCc -3'
miRNA:   3'- cuaAGUC-CGCGU-CUUCGugUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 10494 0.71 0.366151
Target:  5'- ---gCAGGUGCuugccgucGAAGCGCACGuuGUg -3'
miRNA:   3'- cuaaGUCCGCGu-------CUUCGUGUGCggCG- -5'
24120 3' -54.8 NC_005263.2 + 37689 0.71 0.375063
Target:  5'- --aUCAGGCGUucguuGAA-CGCGCGCCGg -3'
miRNA:   3'- cuaAGUCCGCGu----CUUcGUGUGCGGCg -5'
24120 3' -54.8 NC_005263.2 + 9737 0.71 0.383208
Target:  5'- --cUCGGGCgGCAcgccuucGAGGCGCAuuucgccgguCGCCGCg -3'
miRNA:   3'- cuaAGUCCG-CGU-------CUUCGUGU----------GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 29244 0.71 0.38412
Target:  5'- ---gCGGcGCGCcGAGGCACGCGuuGUu -3'
miRNA:   3'- cuaaGUC-CGCGuCUUCGUGUGCggCG- -5'
24120 3' -54.8 NC_005263.2 + 39234 0.71 0.38412
Target:  5'- ---aCGGGCGCGuaacgcauagcGggGCucgcgccccGCGCGCCGCc -3'
miRNA:   3'- cuaaGUCCGCGU-----------CuuCG---------UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 28807 0.71 0.392395
Target:  5'- ---cCGGGCGCGucacggugaccguGAcGCGCACGCgGCg -3'
miRNA:   3'- cuaaGUCCGCGU-------------CUuCGUGUGCGgCG- -5'
24120 3' -54.8 NC_005263.2 + 38636 0.71 0.393321
Target:  5'- aGcgUCAGcUGCAGccGgGCGCGCCGCu -3'
miRNA:   3'- -CuaAGUCcGCGUCuuCgUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 39305 0.71 0.393321
Target:  5'- ---gCAGGCGCAu--GCGCGCGCgauCGCa -3'
miRNA:   3'- cuaaGUCCGCGUcuuCGUGUGCG---GCG- -5'
24120 3' -54.8 NC_005263.2 + 24597 0.71 0.401724
Target:  5'- --gUCGGGCGCAGGcgguggcGGCGCAgGUCa- -3'
miRNA:   3'- cuaAGUCCGCGUCU-------UCGUGUgCGGcg -5'
24120 3' -54.8 NC_005263.2 + 16641 0.7 0.412147
Target:  5'- ---cCAGGCGCcGAAcuuGCAgGCGCuCGCg -3'
miRNA:   3'- cuaaGUCCGCGuCUU---CGUgUGCG-GCG- -5'
24120 3' -54.8 NC_005263.2 + 11409 0.7 0.421766
Target:  5'- uGGUUCGGGCGCGGcuccuuGCcCGCGCuCGa -3'
miRNA:   3'- -CUAAGUCCGCGUCuu----CGuGUGCG-GCg -5'
24120 3' -54.8 NC_005263.2 + 14048 0.7 0.430538
Target:  5'- ---aCGGGCGCcGcgucGAGCgcauugaGCGCGCCGCg -3'
miRNA:   3'- cuaaGUCCGCGuC----UUCG-------UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 18701 0.7 0.43152
Target:  5'- -----cGGCGCGGcAGGCGCGgGCgGCa -3'
miRNA:   3'- cuaaguCCGCGUC-UUCGUGUgCGgCG- -5'
24120 3' -54.8 NC_005263.2 + 20113 0.7 0.43152
Target:  5'- ----aAGGCGCGGAugcgcaGGCGUACGCuCGCg -3'
miRNA:   3'- cuaagUCCGCGUCU------UCGUGUGCG-GCG- -5'
24120 3' -54.8 NC_005263.2 + 27124 0.7 0.441404
Target:  5'- --gUCGacGCGCAGgcGCGCA-GCCGCg -3'
miRNA:   3'- cuaAGUc-CGCGUCuuCGUGUgCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 35987 0.7 0.451415
Target:  5'- ----gAGcGCGCGuaauGgcGCGCGCGCCGCu -3'
miRNA:   3'- cuaagUC-CGCGU----CuuCGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 3172 0.7 0.451415
Target:  5'- -cUUCGuGGCGCGGAAuaAC-UGCCGCu -3'
miRNA:   3'- cuAAGU-CCGCGUCUUcgUGuGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.