miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 3' -54.8 NC_005263.2 + 43913 1.12 0.000545
Target:  5'- aGAUUCAGGCGCAGAAGCACACGCCGCu -3'
miRNA:   3'- -CUAAGUCCGCGUCUUCGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 10013 0.78 0.140686
Target:  5'- ---cCAGGUGCGGGcgcAGCAC-CGCCGCc -3'
miRNA:   3'- cuaaGUCCGCGUCU---UCGUGuGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 37924 0.78 0.148865
Target:  5'- ---gCGGGCGCAGgcGCGC-CGCCGg -3'
miRNA:   3'- cuaaGUCCGCGUCuuCGUGuGCGGCg -5'
24120 3' -54.8 NC_005263.2 + 17073 0.76 0.180993
Target:  5'- ----aAGGUGCucGAgcAGCGCACGCCGCg -3'
miRNA:   3'- cuaagUCCGCGu-CU--UCGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 15552 0.76 0.196556
Target:  5'- --aUCucGGCGCAGAcGCGCGCGCUGa -3'
miRNA:   3'- cuaAGu-CCGCGUCUuCGUGUGCGGCg -5'
24120 3' -54.8 NC_005263.2 + 13359 0.75 0.213275
Target:  5'- aGAUgCGGGCgGCGcGAAaCACGCGCCGCa -3'
miRNA:   3'- -CUAaGUCCG-CGU-CUUcGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 21622 0.74 0.257061
Target:  5'- --aUCaAGGCGCAGugcGGCgACGCGCgGCg -3'
miRNA:   3'- cuaAG-UCCGCGUCu--UCG-UGUGCGgCG- -5'
24120 3' -54.8 NC_005263.2 + 8379 0.74 0.257061
Target:  5'- --gUCAguGGCGCAGGcaGGCcgaccaggaaGCGCGCCGCc -3'
miRNA:   3'- cuaAGU--CCGCGUCU--UCG----------UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 29150 0.73 0.277974
Target:  5'- --gUCGGGCGUAGAAacGCccGCACGUgGCg -3'
miRNA:   3'- cuaAGUCCGCGUCUU--CG--UGUGCGgCG- -5'
24120 3' -54.8 NC_005263.2 + 46245 0.73 0.28524
Target:  5'- ---cCAGGCGCgccAGAAcCGCACGUCGCc -3'
miRNA:   3'- cuaaGUCCGCG---UCUUcGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 35614 0.72 0.315801
Target:  5'- ---cCGGcGCGCAGGAuGCcgcaauGCGCGCCGCc -3'
miRNA:   3'- cuaaGUC-CGCGUCUU-CG------UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 8735 0.72 0.315801
Target:  5'- ---gCGGuGCGUcguAGAAGCGCGcCGCCGCc -3'
miRNA:   3'- cuaaGUC-CGCG---UCUUCGUGU-GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 29352 0.72 0.315801
Target:  5'- ---cCGGGUGCGcGAGCAgGCGCCGg -3'
miRNA:   3'- cuaaGUCCGCGUcUUCGUgUGCGGCg -5'
24120 3' -54.8 NC_005263.2 + 15944 0.72 0.323818
Target:  5'- --aUCGGGCGCAuGucGCacgACACGCgGCg -3'
miRNA:   3'- cuaAGUCCGCGU-CuuCG---UGUGCGgCG- -5'
24120 3' -54.8 NC_005263.2 + 33672 0.72 0.331985
Target:  5'- ----gAGGCGCGc--GCGCACGCCGUc -3'
miRNA:   3'- cuaagUCCGCGUcuuCGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 3232 0.72 0.331985
Target:  5'- --cUCGGGCGacgaCAGGuaGGCGCGauCGCCGCg -3'
miRNA:   3'- cuaAGUCCGC----GUCU--UCGUGU--GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 35542 0.72 0.340302
Target:  5'- ---gCGGcGCGCGGGcgGGCGCuacgGCGCCGCc -3'
miRNA:   3'- cuaaGUC-CGCGUCU--UCGUG----UGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 22397 0.72 0.340302
Target:  5'- ---gCAGGcCGC-GAAcGUACGCGCCGCc -3'
miRNA:   3'- cuaaGUCC-GCGuCUU-CGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 45585 0.72 0.340302
Target:  5'- --gUCAGGCGUAcAAGUACauguACGUCGCg -3'
miRNA:   3'- cuaAGUCCGCGUcUUCGUG----UGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 36212 0.72 0.340302
Target:  5'- ---cCAGcGCGCAGgcGCccgGCGCCGCg -3'
miRNA:   3'- cuaaGUC-CGCGUCuuCGug-UGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.