miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 3' -54.8 NC_005263.2 + 5202 0.66 0.702759
Target:  5'- ---gCAGGCGCGGcgucGCuAC-CGUCGCg -3'
miRNA:   3'- cuaaGUCCGCGUCuu--CG-UGuGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 16536 0.66 0.680574
Target:  5'- --gUC-GGCGUugucGAGCACggcGCGCCGCc -3'
miRNA:   3'- cuaAGuCCGCGuc--UUCGUG---UGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 16330 0.66 0.679459
Target:  5'- ----gAGGCGCAaaaaaaacgcuucGAcgagacgaAGCGCGCGgCCGCg -3'
miRNA:   3'- cuaagUCCGCGU-------------CU--------UCGUGUGC-GGCG- -5'
24120 3' -54.8 NC_005263.2 + 34484 0.66 0.669403
Target:  5'- --aUCAGGCGUucGGccGCGCGCacCCGUa -3'
miRNA:   3'- cuaAGUCCGCG--UCuuCGUGUGc-GGCG- -5'
24120 3' -54.8 NC_005263.2 + 26653 0.66 0.669403
Target:  5'- aGUUCGGGCcguucCAGAuacGCGCGacgGCCGCc -3'
miRNA:   3'- cUAAGUCCGc----GUCUu--CGUGUg--CGGCG- -5'
24120 3' -54.8 NC_005263.2 + 10732 0.66 0.669403
Target:  5'- ---cCAGGgcgaCGCAGAcucgAGCGCAUcgagcacgGCCGCg -3'
miRNA:   3'- cuaaGUCC----GCGUCU----UCGUGUG--------CGGCG- -5'
24120 3' -54.8 NC_005263.2 + 10851 0.66 0.658196
Target:  5'- uGGUgCGGGCuacggcgucgcgGCGGAacucggcaccGGCGCGCGUCGUg -3'
miRNA:   3'- -CUAaGUCCG------------CGUCU----------UCGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 47947 0.66 0.658196
Target:  5'- ---cCGGGCGCGGAu-CGCGUGCuCGCa -3'
miRNA:   3'- cuaaGUCCGCGUCUucGUGUGCG-GCG- -5'
24120 3' -54.8 NC_005263.2 + 18447 0.66 0.658196
Target:  5'- --cUCgAGGUGCGcguGAAGCAgcCGCGCgGCu -3'
miRNA:   3'- cuaAG-UCCGCGU---CUUCGU--GUGCGgCG- -5'
24120 3' -54.8 NC_005263.2 + 16670 0.66 0.680574
Target:  5'- cGUUCGGcGUgaacauucaGCAGGAcgugccGCACAUGCUGCa -3'
miRNA:   3'- cUAAGUC-CG---------CGUCUU------CGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 43295 0.66 0.680574
Target:  5'- aGAUUCcgggcGGCGUAuGAGCGuCACGCgaCGCg -3'
miRNA:   3'- -CUAAGu----CCGCGUcUUCGU-GUGCG--GCG- -5'
24120 3' -54.8 NC_005263.2 + 27663 0.66 0.680574
Target:  5'- --gUCucGGCgGCGGcAAGCACG-GCCGCc -3'
miRNA:   3'- cuaAGu-CCG-CGUC-UUCGUGUgCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 47921 0.66 0.702759
Target:  5'- ---cCGGGCGCAcGGGCAgCGgGCuCGCc -3'
miRNA:   3'- cuaaGUCCGCGUcUUCGU-GUgCG-GCG- -5'
24120 3' -54.8 NC_005263.2 + 36085 0.66 0.702759
Target:  5'- -----cGGCGCAagcuuGAGCGCGCcGUCGCg -3'
miRNA:   3'- cuaaguCCGCGUc----UUCGUGUG-CGGCG- -5'
24120 3' -54.8 NC_005263.2 + 15310 0.66 0.702759
Target:  5'- --gUCAGcgagcuGCGC-GAGGCGCGgGCCGa -3'
miRNA:   3'- cuaAGUC------CGCGuCUUCGUGUgCGGCg -5'
24120 3' -54.8 NC_005263.2 + 6171 0.66 0.702759
Target:  5'- --aUCAGGCcCAGAAuCACGCGCagGUc -3'
miRNA:   3'- cuaAGUCCGcGUCUUcGUGUGCGg-CG- -5'
24120 3' -54.8 NC_005263.2 + 2389 0.66 0.702759
Target:  5'- cGAgcggCAGGC-CGG-GGCACcacgcuuCGCCGCg -3'
miRNA:   3'- -CUaa--GUCCGcGUCuUCGUGu------GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 42941 0.66 0.691697
Target:  5'- --aUCAGGCGCAaa--C-CGCGCUGCu -3'
miRNA:   3'- cuaAGUCCGCGUcuucGuGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 22544 0.66 0.691697
Target:  5'- -----cGGCGCGGAcGCcgACGUCGCg -3'
miRNA:   3'- cuaaguCCGCGUCUuCGugUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 15356 0.66 0.691697
Target:  5'- -----cGGCGCuGAAcgucguacuGCGCACGCUGUc -3'
miRNA:   3'- cuaaguCCGCGuCUU---------CGUGUGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.