miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 3' -54.8 NC_005263.2 + 36 0.66 0.691697
Target:  5'- --gUCAcuGGCGCGGcAGGUcggGCGCGCCu- -3'
miRNA:   3'- cuaAGU--CCGCGUC-UUCG---UGUGCGGcg -5'
24120 3' -54.8 NC_005263.2 + 152 0.7 0.461549
Target:  5'- cGGUUC-GGUGCG--AGCACGCGauCCGCg -3'
miRNA:   3'- -CUAAGuCCGCGUcuUCGUGUGC--GGCG- -5'
24120 3' -54.8 NC_005263.2 + 1114 0.67 0.613222
Target:  5'- ---gCAGucGCGCGcGAAGUcCGCGCCGUg -3'
miRNA:   3'- cuaaGUC--CGCGU-CUUCGuGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 1270 0.66 0.646963
Target:  5'- --cUCcuuGGCGCGccgccuGGCGCGCGuuGCg -3'
miRNA:   3'- cuaAGu--CCGCGUcu----UCGUGUGCggCG- -5'
24120 3' -54.8 NC_005263.2 + 2389 0.66 0.702759
Target:  5'- cGAgcggCAGGC-CGG-GGCACcacgcuuCGCCGCg -3'
miRNA:   3'- -CUaa--GUCCGcGUCuUCGUGu------GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 2898 0.68 0.546453
Target:  5'- uGUUCGGGCgGCAGguGgACGCcauaguugGCCGCc -3'
miRNA:   3'- cUAAGUCCG-CGUCuuCgUGUG--------CGGCG- -5'
24120 3' -54.8 NC_005263.2 + 3172 0.7 0.451415
Target:  5'- -cUUCGuGGCGCGGAAuaAC-UGCCGCu -3'
miRNA:   3'- cuAAGU-CCGCGUCUUcgUGuGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 3198 0.66 0.702759
Target:  5'- ----gAGGcCGguGAgccGGCccgGCGCGCCGCc -3'
miRNA:   3'- cuaagUCC-GCguCU---UCG---UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 3232 0.72 0.331985
Target:  5'- --cUCGGGCGacgaCAGGuaGGCGCGauCGCCGCg -3'
miRNA:   3'- cuaAGUCCGC----GUCU--UCGUGU--GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 3310 0.66 0.654828
Target:  5'- ----uGGGCGCGGccgcGCgguguucaacgucuGCGCGCCGCc -3'
miRNA:   3'- cuaagUCCGCGUCuu--CG--------------UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 3448 0.69 0.513901
Target:  5'- -cUUCGGcGCGCGcgacgcaucGAGGCGCAgcucgaucagcUGCCGCa -3'
miRNA:   3'- cuAAGUC-CGCGU---------CUUCGUGU-----------GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 5202 0.66 0.702759
Target:  5'- ---gCAGGCGCGGcgucGCuAC-CGUCGCg -3'
miRNA:   3'- cuaaGUCCGCGUCuu--CG-UGuGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 5742 0.66 0.646963
Target:  5'- -uUUCGGGaucaauucgcgcUGCAGcAGCACGCGauaCGCu -3'
miRNA:   3'- cuAAGUCC------------GCGUCuUCGUGUGCg--GCG- -5'
24120 3' -54.8 NC_005263.2 + 5931 0.67 0.613222
Target:  5'- --cUCGGGCGU--GAGCGuCAUGUCGUg -3'
miRNA:   3'- cuaAGUCCGCGucUUCGU-GUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 6171 0.66 0.702759
Target:  5'- --aUCAGGCcCAGAAuCACGCGCagGUc -3'
miRNA:   3'- cuaAGUCCGcGUCUUcGUGUGCGg-CG- -5'
24120 3' -54.8 NC_005263.2 + 6252 0.67 0.635716
Target:  5'- ---cCAGGCGCGGucGUGC-CGUCGg -3'
miRNA:   3'- cuaaGUCCGCGUCuuCGUGuGCGGCg -5'
24120 3' -54.8 NC_005263.2 + 8379 0.74 0.257061
Target:  5'- --gUCAguGGCGCAGGcaGGCcgaccaggaaGCGCGCCGCc -3'
miRNA:   3'- cuaAGU--CCGCGUCU--UCG----------UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 8735 0.72 0.315801
Target:  5'- ---gCGGuGCGUcguAGAAGCGCGcCGCCGCc -3'
miRNA:   3'- cuaaGUC-CGCG---UCUUCGUGU-GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 9737 0.71 0.383208
Target:  5'- --cUCGGGCgGCAcgccuucGAGGCGCAuuucgccgguCGCCGCg -3'
miRNA:   3'- cuaAGUCCG-CGU-------CUUCGUGU----------GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 10013 0.78 0.140686
Target:  5'- ---cCAGGUGCGGGcgcAGCAC-CGCCGCc -3'
miRNA:   3'- cuaaGUCCGCGUCU---UCGUGuGCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.