miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 3' -54.8 NC_005263.2 + 47947 0.66 0.658196
Target:  5'- ---cCGGGCGCGGAu-CGCGUGCuCGCa -3'
miRNA:   3'- cuaaGUCCGCGUCUucGUGUGCG-GCG- -5'
24120 3' -54.8 NC_005263.2 + 47921 0.66 0.702759
Target:  5'- ---cCGGGCGCAcGGGCAgCGgGCuCGCc -3'
miRNA:   3'- cuaaGUCCGCGUcUUCGU-GUgCG-GCG- -5'
24120 3' -54.8 NC_005263.2 + 47437 0.66 0.687254
Target:  5'- ----aAGGCGCGcuacgauGAGGCguucgaucuggccgGCACGUCGCg -3'
miRNA:   3'- cuaagUCCGCGU-------CUUCG--------------UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 47095 0.66 0.669403
Target:  5'- ----aAGGCGgaAGcAGCcaACACGCCGCc -3'
miRNA:   3'- cuaagUCCGCg-UCuUCG--UGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 46989 0.7 0.451415
Target:  5'- ---gCAcGGCGCGGAcuucGCGCGCGaCUGCa -3'
miRNA:   3'- cuaaGU-CCGCGUCUu---CGUGUGC-GGCG- -5'
24120 3' -54.8 NC_005263.2 + 46932 0.67 0.601997
Target:  5'- ------cGCGCAgcacGAGGCACAaguCGCCGCg -3'
miRNA:   3'- cuaagucCGCGU----CUUCGUGU---GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 46846 0.66 0.646963
Target:  5'- ---gCGGcGCGCcaAGGAGCACGucaUGCCGUu -3'
miRNA:   3'- cuaaGUC-CGCG--UCUUCGUGU---GCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 46681 0.69 0.471802
Target:  5'- --cUCGcGCGCAGccaaggcGGCGCGCGCCGa -3'
miRNA:   3'- cuaAGUcCGCGUCu------UCGUGUGCGGCg -5'
24120 3' -54.8 NC_005263.2 + 46245 0.73 0.28524
Target:  5'- ---cCAGGCGCgccAGAAcCGCACGUCGCc -3'
miRNA:   3'- cuaaGUCCGCG---UCUUcGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 46083 0.67 0.635716
Target:  5'- ---gCGGGCGCcGuuauGCGC-CGCUGCg -3'
miRNA:   3'- cuaaGUCCGCGuCuu--CGUGuGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 45657 0.68 0.557454
Target:  5'- cGUUCGGcGCGCaAGuguuuGC-CGCGCCGUa -3'
miRNA:   3'- cUAAGUC-CGCG-UCuu---CGuGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 45636 0.68 0.557454
Target:  5'- cGAUg-AGGCGCuccucGAGGUgcuugccgaGCugGCCGCg -3'
miRNA:   3'- -CUAagUCCGCGu----CUUCG---------UGugCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 45585 0.72 0.340302
Target:  5'- --gUCAGGCGUAcAAGUACauguACGUCGCg -3'
miRNA:   3'- cuaAGUCCGCGUcUUCGUG----UGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 44115 0.69 0.481128
Target:  5'- --gUCAGGUGCgcugcucGGcGGCGCGCGcCCGUu -3'
miRNA:   3'- cuaAGUCCGCG-------UCuUCGUGUGC-GGCG- -5'
24120 3' -54.8 NC_005263.2 + 43913 1.12 0.000545
Target:  5'- aGAUUCAGGCGCAGAAGCACACGCCGCu -3'
miRNA:   3'- -CUAAGUCCGCGUCUUCGUGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 43295 0.66 0.680574
Target:  5'- aGAUUCcgggcGGCGUAuGAGCGuCACGCgaCGCg -3'
miRNA:   3'- -CUAAGu----CCGCGUcUUCGU-GUGCG--GCG- -5'
24120 3' -54.8 NC_005263.2 + 42941 0.66 0.691697
Target:  5'- --aUCAGGCGCAaa--C-CGCGCUGCu -3'
miRNA:   3'- cuaAGUCCGCGUcuucGuGUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 42564 0.69 0.471802
Target:  5'- gGAUgUGGGCGCA--GGCACAUGCCu- -3'
miRNA:   3'- -CUAaGUCCGCGUcuUCGUGUGCGGcg -5'
24120 3' -54.8 NC_005263.2 + 42047 0.72 0.357386
Target:  5'- --gUCGGcGCGCGuGAAGC--GCGCCGCc -3'
miRNA:   3'- cuaAGUC-CGCGU-CUUCGugUGCGGCG- -5'
24120 3' -54.8 NC_005263.2 + 41779 0.67 0.590797
Target:  5'- --aUC-GGCGCGGgcGacuCGCGCGCCGg -3'
miRNA:   3'- cuaAGuCCGCGUCuuC---GUGUGCGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.