Results 41 - 60 of 74 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 47372 | 0.69 | 0.470755 |
Target: 5'- uGgGCGGCGCGUucgaUGcGCGCGAGCa--- -3' miRNA: 3'- -CgCGCCGCGCG----ACaUGUGCUUGagca -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 9537 | 0.69 | 0.470755 |
Target: 5'- uGCGCGGCaGCGaccgACGCGGcGCUCGc -3' miRNA: 3'- -CGCGCCG-CGCgacaUGUGCU-UGAGCa -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 17397 | 0.69 | 0.460743 |
Target: 5'- gGCGCGGcCGCGCgccugGCggGCGGugUCGc -3' miRNA: 3'- -CGCGCC-GCGCGaca--UG--UGCUugAGCa -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 29058 | 0.69 | 0.460743 |
Target: 5'- cGCGCGGCGCGUccucgGggcgGCGCGca-UCGg -3' miRNA: 3'- -CGCGCCGCGCGa----Ca---UGUGCuugAGCa -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 13963 | 0.69 | 0.450845 |
Target: 5'- aCGCGGCGCGC-GUuCGCGGGg-CGUg -3' miRNA: 3'- cGCGCCGCGCGaCAuGUGCUUgaGCA- -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 30355 | 0.69 | 0.444963 |
Target: 5'- aGCGCGGcCGCGCUGccGCcggcgccgaguGCGAgccccaugcggcggcGCUCGUc -3' miRNA: 3'- -CGCGCC-GCGCGACa-UG-----------UGCU---------------UGAGCA- -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 27921 | 0.69 | 0.441065 |
Target: 5'- -gGCGGCGCGUcGcccgGCGCGcuCUCGUc -3' miRNA: 3'- cgCGCCGCGCGaCa---UGUGCuuGAGCA- -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 26094 | 0.69 | 0.441065 |
Target: 5'- aUGCGGCcgaGCGCguccugGUACGCGccGCUCGa -3' miRNA: 3'- cGCGCCG---CGCGa-----CAUGUGCu-UGAGCa -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 19067 | 0.69 | 0.435255 |
Target: 5'- cGCGCGGCcugcgcGCGCUgGUGCGucuugcagggcuggcCGAugUCGa -3' miRNA: 3'- -CGCGCCG------CGCGA-CAUGU---------------GCUugAGCa -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 6059 | 0.69 | 0.431407 |
Target: 5'- -gGCGGCGCGCUucACGCGcGC-CGa -3' miRNA: 3'- cgCGCCGCGCGAcaUGUGCuUGaGCa -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 35384 | 0.7 | 0.421873 |
Target: 5'- -gGCGGCGCgGCUGaACAcCGAGC-CGg -3' miRNA: 3'- cgCGCCGCG-CGACaUGU-GCUUGaGCa -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 30919 | 0.7 | 0.421873 |
Target: 5'- aGCGCGGCGacgGC-GUacGCGCGAGCUgCGc -3' miRNA: 3'- -CGCGCCGCg--CGaCA--UGUGCUUGA-GCa -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 36624 | 0.7 | 0.420927 |
Target: 5'- gGCGaCGGCgcaguuuaacaguGCGCggcaGCGCGAGCUCGg -3' miRNA: 3'- -CGC-GCCG-------------CGCGaca-UGUGCUUGAGCa -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 21197 | 0.7 | 0.403192 |
Target: 5'- cGCGCGGCGCggGCgaguggGUGCGuuuCGAGCgCGUc -3' miRNA: 3'- -CGCGCCGCG--CGa-----CAUGU---GCUUGaGCA- -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 37971 | 0.7 | 0.403192 |
Target: 5'- cGCGcCGGCugGCGCUGaagguggcgGCaACGAACUCGc -3' miRNA: 3'- -CGC-GCCG--CGCGACa--------UG-UGCUUGAGCa -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 19850 | 0.7 | 0.403192 |
Target: 5'- cGCuGCaGCGCGUgcagGUGCGCG-ACUCGc -3' miRNA: 3'- -CG-CGcCGCGCGa---CAUGUGCuUGAGCa -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 12113 | 0.7 | 0.39405 |
Target: 5'- cGCaGCGGCGCGCgcgccauUACGCGcGCUCc- -3' miRNA: 3'- -CG-CGCCGCGCGac-----AUGUGCuUGAGca -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 6618 | 0.7 | 0.385044 |
Target: 5'- -gGCGGCGCGCUcgGCGCGG--UCGa -3' miRNA: 3'- cgCGCCGCGCGAcaUGUGCUugAGCa -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 39110 | 0.7 | 0.385044 |
Target: 5'- cGCGCGacucGUGCGCcGUGCGuCGGcGCUCGUg -3' miRNA: 3'- -CGCGC----CGCGCGaCAUGU-GCU-UGAGCA- -5' |
|||||||
24120 | 5' | -56.2 | NC_005263.2 | + | 31020 | 0.7 | 0.376175 |
Target: 5'- aGUGCGGCgagGCGCggcGUGCGCu-GCUCGa -3' miRNA: 3'- -CGCGCCG---CGCGa--CAUGUGcuUGAGCa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home