miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 5' -56.2 NC_005263.2 + 24210 0.67 0.575994
Target:  5'- cGCG-GGCGCGCU---CACGAGCgCGc -3'
miRNA:   3'- -CGCgCCGCGCGAcauGUGCUUGaGCa -5'
24120 5' -56.2 NC_005263.2 + 18770 0.67 0.575994
Target:  5'- gGCGCGGUgcucGCGCUGguuauCGuGCUCGc -3'
miRNA:   3'- -CGCGCCG----CGCGACaugu-GCuUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 19312 0.67 0.565143
Target:  5'- aCGCGGCccGCcgGCUGUGCGgugguCGAugUCGa -3'
miRNA:   3'- cGCGCCG--CG--CGACAUGU-----GCUugAGCa -5'
24120 5' -56.2 NC_005263.2 + 31497 0.67 0.565143
Target:  5'- -aGCGGCGCgagcuGCUGcucgcGCGCGAGCcCGg -3'
miRNA:   3'- cgCGCCGCG-----CGACa----UGUGCUUGaGCa -5'
24120 5' -56.2 NC_005263.2 + 31567 0.67 0.565143
Target:  5'- -gGCGGCGCGCcGUGCuCGAcaacGC-CGa -3'
miRNA:   3'- cgCGCCGCGCGaCAUGuGCU----UGaGCa -5'
24120 5' -56.2 NC_005263.2 + 18924 0.68 0.532945
Target:  5'- aGCGUGacCGCGCg--GCACGAgcGCUCGa -3'
miRNA:   3'- -CGCGCc-GCGCGacaUGUGCU--UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 46180 0.68 0.522354
Target:  5'- gGUGcCGGCGCGCUcGUgcagACGCGcGGCUgGUa -3'
miRNA:   3'- -CGC-GCCGCGCGA-CA----UGUGC-UUGAgCA- -5'
24120 5' -56.2 NC_005263.2 + 42895 0.68 0.5213
Target:  5'- cGUGCcGCGCGCUcgccuggacgcgaGUGCGCGAGCa--- -3'
miRNA:   3'- -CGCGcCGCGCGA-------------CAUGUGCUUGagca -5'
24120 5' -56.2 NC_005263.2 + 9491 0.68 0.511846
Target:  5'- cGCGcCGGCGCuauccaucGC-GUGCGCGGGCugaaUCGUg -3'
miRNA:   3'- -CGC-GCCGCG--------CGaCAUGUGCUUG----AGCA- -5'
24120 5' -56.2 NC_005263.2 + 10519 0.68 0.511846
Target:  5'- cGCGuCGGCGaGCUGacGCACGAGCagCGc -3'
miRNA:   3'- -CGC-GCCGCgCGACa-UGUGCUUGa-GCa -5'
24120 5' -56.2 NC_005263.2 + 4961 0.68 0.508711
Target:  5'- aGCGCgacgacugaguuccGGCGCGCUccaGCACGAGCguugCGc -3'
miRNA:   3'- -CGCG--------------CCGCGCGAca-UGUGCUUGa---GCa -5'
24120 5' -56.2 NC_005263.2 + 46117 0.68 0.501426
Target:  5'- cGCGcCGGCGUGacgcuUACGAACUCGc -3'
miRNA:   3'- -CGC-GCCGCGCgacauGUGCUUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 39028 0.68 0.501426
Target:  5'- uGC-CGGuCGCGCUGUucgGCACGGGCg--- -3'
miRNA:   3'- -CGcGCC-GCGCGACA---UGUGCUUGagca -5'
24120 5' -56.2 NC_005263.2 + 40066 0.68 0.501426
Target:  5'- cGCGCGGCGC-CacgGCGCGGACgccUCGc -3'
miRNA:   3'- -CGCGCCGCGcGacaUGUGCUUG---AGCa -5'
24120 5' -56.2 NC_005263.2 + 45857 0.68 0.501426
Target:  5'- cGCGCGGCGCGCUacgGCAag--UUCGa -3'
miRNA:   3'- -CGCGCCGCGCGAca-UGUgcuuGAGCa -5'
24120 5' -56.2 NC_005263.2 + 15391 0.68 0.491101
Target:  5'- aGCGaccCGGC-CGCcGUGCAUGcGCUCGUg -3'
miRNA:   3'- -CGC---GCCGcGCGaCAUGUGCuUGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 6748 0.69 0.480875
Target:  5'- cGCGCGucacguccaucGCGCGCcGg--GCGAGCUCGg -3'
miRNA:   3'- -CGCGC-----------CGCGCGaCaugUGCUUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 5919 0.69 0.480875
Target:  5'- gGCGCGGCGUGC-GUACGgaucaGAuAUUCGa -3'
miRNA:   3'- -CGCGCCGCGCGaCAUGUg----CU-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 7227 0.69 0.480875
Target:  5'- gGCGaCGGCGCcauGCgGUGCACGcgaGGCUCu- -3'
miRNA:   3'- -CGC-GCCGCG---CGaCAUGUGC---UUGAGca -5'
24120 5' -56.2 NC_005263.2 + 28005 0.69 0.47479
Target:  5'- uGCGCGGCGaCGCUGgucgACcagACGccauucggguaguucGGCUCGa -3'
miRNA:   3'- -CGCGCCGC-GCGACa---UG---UGC---------------UUGAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.