miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 5' -56.2 NC_005263.2 + 21197 0.7 0.403192
Target:  5'- cGCGCGGCGCggGCgaguggGUGCGuuuCGAGCgCGUc -3'
miRNA:   3'- -CGCGCCGCG--CGa-----CAUGU---GCUUGaGCA- -5'
24120 5' -56.2 NC_005263.2 + 36624 0.7 0.420927
Target:  5'- gGCGaCGGCgcaguuuaacaguGCGCggcaGCGCGAGCUCGg -3'
miRNA:   3'- -CGC-GCCG-------------CGCGaca-UGUGCUUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 30919 0.7 0.421873
Target:  5'- aGCGCGGCGacgGC-GUacGCGCGAGCUgCGc -3'
miRNA:   3'- -CGCGCCGCg--CGaCA--UGUGCUUGA-GCa -5'
24120 5' -56.2 NC_005263.2 + 35384 0.7 0.421873
Target:  5'- -gGCGGCGCgGCUGaACAcCGAGC-CGg -3'
miRNA:   3'- cgCGCCGCG-CGACaUGU-GCUUGaGCa -5'
24120 5' -56.2 NC_005263.2 + 6059 0.69 0.431407
Target:  5'- -gGCGGCGCGCUucACGCGcGC-CGa -3'
miRNA:   3'- cgCGCCGCGCGAcaUGUGCuUGaGCa -5'
24120 5' -56.2 NC_005263.2 + 19067 0.69 0.435255
Target:  5'- cGCGCGGCcugcgcGCGCUgGUGCGucuugcagggcuggcCGAugUCGa -3'
miRNA:   3'- -CGCGCCG------CGCGA-CAUGU---------------GCUugAGCa -5'
24120 5' -56.2 NC_005263.2 + 26094 0.69 0.441065
Target:  5'- aUGCGGCcgaGCGCguccugGUACGCGccGCUCGa -3'
miRNA:   3'- cGCGCCG---CGCGa-----CAUGUGCu-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 27921 0.69 0.441065
Target:  5'- -gGCGGCGCGUcGcccgGCGCGcuCUCGUc -3'
miRNA:   3'- cgCGCCGCGCGaCa---UGUGCuuGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 30355 0.69 0.444963
Target:  5'- aGCGCGGcCGCGCUGccGCcggcgccgaguGCGAgccccaugcggcggcGCUCGUc -3'
miRNA:   3'- -CGCGCC-GCGCGACa-UG-----------UGCU---------------UGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 13963 0.69 0.450845
Target:  5'- aCGCGGCGCGC-GUuCGCGGGg-CGUg -3'
miRNA:   3'- cGCGCCGCGCGaCAuGUGCUUgaGCA- -5'
24120 5' -56.2 NC_005263.2 + 17397 0.69 0.460743
Target:  5'- gGCGCGGcCGCGCgccugGCggGCGGugUCGc -3'
miRNA:   3'- -CGCGCC-GCGCGaca--UG--UGCUugAGCa -5'
24120 5' -56.2 NC_005263.2 + 29058 0.69 0.460743
Target:  5'- cGCGCGGCGCGUccucgGggcgGCGCGca-UCGg -3'
miRNA:   3'- -CGCGCCGCGCGa----Ca---UGUGCuugAGCa -5'
24120 5' -56.2 NC_005263.2 + 47372 0.69 0.470755
Target:  5'- uGgGCGGCGCGUucgaUGcGCGCGAGCa--- -3'
miRNA:   3'- -CgCGCCGCGCG----ACaUGUGCUUGagca -5'
24120 5' -56.2 NC_005263.2 + 9537 0.69 0.470755
Target:  5'- uGCGCGGCaGCGaccgACGCGGcGCUCGc -3'
miRNA:   3'- -CGCGCCG-CGCgacaUGUGCU-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 28005 0.69 0.47479
Target:  5'- uGCGCGGCGaCGCUGgucgACcagACGccauucggguaguucGGCUCGa -3'
miRNA:   3'- -CGCGCCGC-GCGACa---UG---UGC---------------UUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 5919 0.69 0.480875
Target:  5'- gGCGCGGCGUGC-GUACGgaucaGAuAUUCGa -3'
miRNA:   3'- -CGCGCCGCGCGaCAUGUg----CU-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 7227 0.69 0.480875
Target:  5'- gGCGaCGGCGCcauGCgGUGCACGcgaGGCUCu- -3'
miRNA:   3'- -CGC-GCCGCG---CGaCAUGUGC---UUGAGca -5'
24120 5' -56.2 NC_005263.2 + 6748 0.69 0.480875
Target:  5'- cGCGCGucacguccaucGCGCGCcGg--GCGAGCUCGg -3'
miRNA:   3'- -CGCGC-----------CGCGCGaCaugUGCUUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 15391 0.68 0.491101
Target:  5'- aGCGaccCGGC-CGCcGUGCAUGcGCUCGUg -3'
miRNA:   3'- -CGC---GCCGcGCGaCAUGUGCuUGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 39028 0.68 0.501426
Target:  5'- uGC-CGGuCGCGCUGUucgGCACGGGCg--- -3'
miRNA:   3'- -CGcGCC-GCGCGACA---UGUGCUUGagca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.