miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 5' -56.2 NC_005263.2 + 43949 1.09 0.000763
Target:  5'- aGCGCGGCGCGCUGUACACGAACUCGUu -3'
miRNA:   3'- -CGCGCCGCGCGACAUGUGCUUGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 9846 0.78 0.125804
Target:  5'- gGCGCGGCGCGCU-UGCuCG-ACUCGg -3'
miRNA:   3'- -CGCGCCGCGCGAcAUGuGCuUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 41550 0.76 0.179396
Target:  5'- cGCGCGGCGCGCcGUggcggcgAUGCGAGCUUu- -3'
miRNA:   3'- -CGCGCCGCGCGaCA-------UGUGCUUGAGca -5'
24120 5' -56.2 NC_005263.2 + 14175 0.75 0.184802
Target:  5'- -gGCGGC-CGgUGUGCGCGAGCUgCGUg -3'
miRNA:   3'- cgCGCCGcGCgACAUGUGCUUGA-GCA- -5'
24120 5' -56.2 NC_005263.2 + 31260 0.75 0.186804
Target:  5'- gGCGCGGCGCcgggcaggucgaaguGCUGUcGCACguaGAACUCGc -3'
miRNA:   3'- -CGCGCCGCG---------------CGACA-UGUG---CUUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 19749 0.75 0.195
Target:  5'- gGCGCuGGCGCGCUG---GCGGcGCUCGUg -3'
miRNA:   3'- -CGCG-CCGCGCGACaugUGCU-UGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 34046 0.74 0.234635
Target:  5'- gGCGCGGCGCGCUca--AUGcGCUCGa -3'
miRNA:   3'- -CGCGCCGCGCGAcaugUGCuUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 6530 0.73 0.253598
Target:  5'- -aGCGGCGCGCauacGCGCGAaaGCUCGc -3'
miRNA:   3'- cgCGCCGCGCGaca-UGUGCU--UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 8854 0.73 0.273804
Target:  5'- -gGCGGCGCGCgggGCGCGAGCccCGc -3'
miRNA:   3'- cgCGCCGCGCGacaUGUGCUUGa-GCa -5'
24120 5' -56.2 NC_005263.2 + 17763 0.72 0.287978
Target:  5'- aGCGCGGcCGCGCUcgGCACGcgcuuCUCGc -3'
miRNA:   3'- -CGCGCC-GCGCGAcaUGUGCuu---GAGCa -5'
24120 5' -56.2 NC_005263.2 + 5205 0.72 0.295279
Target:  5'- gGCGCGGCGuCGCUaccGU-CGCGAAUUCc- -3'
miRNA:   3'- -CGCGCCGC-GCGA---CAuGUGCUUGAGca -5'
24120 5' -56.2 NC_005263.2 + 16438 0.72 0.302723
Target:  5'- gGCGCGGCGggccuCGCUG-GCAUGGuACUCGc -3'
miRNA:   3'- -CGCGCCGC-----GCGACaUGUGCU-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 25732 0.72 0.302723
Target:  5'- gGCGCuGCGCGCcGUGCACGAcCUg-- -3'
miRNA:   3'- -CGCGcCGCGCGaCAUGUGCUuGAgca -5'
24120 5' -56.2 NC_005263.2 + 21347 0.71 0.358855
Target:  5'- uCGCGaGCGCGCUgaaugaacGUGCGC-AACUCGa -3'
miRNA:   3'- cGCGC-CGCGCGA--------CAUGUGcUUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 31020 0.7 0.376175
Target:  5'- aGUGCGGCgagGCGCggcGUGCGCu-GCUCGa -3'
miRNA:   3'- -CGCGCCG---CGCGa--CAUGUGcuUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 39110 0.7 0.385044
Target:  5'- cGCGCGacucGUGCGCcGUGCGuCGGcGCUCGUg -3'
miRNA:   3'- -CGCGC----CGCGCGaCAUGU-GCU-UGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 6618 0.7 0.385044
Target:  5'- -gGCGGCGCGCUcgGCGCGG--UCGa -3'
miRNA:   3'- cgCGCCGCGCGAcaUGUGCUugAGCa -5'
24120 5' -56.2 NC_005263.2 + 12113 0.7 0.39405
Target:  5'- cGCaGCGGCGCGCgcgccauUACGCGcGCUCc- -3'
miRNA:   3'- -CG-CGCCGCGCGac-----AUGUGCuUGAGca -5'
24120 5' -56.2 NC_005263.2 + 37971 0.7 0.403192
Target:  5'- cGCGcCGGCugGCGCUGaagguggcgGCaACGAACUCGc -3'
miRNA:   3'- -CGC-GCCG--CGCGACa--------UG-UGCUUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 19850 0.7 0.403192
Target:  5'- cGCuGCaGCGCGUgcagGUGCGCG-ACUCGc -3'
miRNA:   3'- -CG-CGcCGCGCGa---CAUGUGCuUGAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.