miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 5' -56.2 NC_005263.2 + 14175 0.75 0.184802
Target:  5'- -gGCGGC-CGgUGUGCGCGAGCUgCGUg -3'
miRNA:   3'- cgCGCCGcGCgACAUGUGCUUGA-GCA- -5'
24120 5' -56.2 NC_005263.2 + 28005 0.69 0.47479
Target:  5'- uGCGCGGCGaCGCUGgucgACcagACGccauucggguaguucGGCUCGa -3'
miRNA:   3'- -CGCGCCGC-GCGACa---UG---UGC---------------UUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 7227 0.69 0.480875
Target:  5'- gGCGaCGGCGCcauGCgGUGCACGcgaGGCUCu- -3'
miRNA:   3'- -CGC-GCCGCG---CGaCAUGUGC---UUGAGca -5'
24120 5' -56.2 NC_005263.2 + 7977 0.66 0.663721
Target:  5'- aCGCGGCGCcagaGCU--GCACGAG-UCGg -3'
miRNA:   3'- cGCGCCGCG----CGAcaUGUGCUUgAGCa -5'
24120 5' -56.2 NC_005263.2 + 5205 0.72 0.295279
Target:  5'- gGCGCGGCGuCGCUaccGU-CGCGAAUUCc- -3'
miRNA:   3'- -CGCGCCGC-GCGA---CAuGUGCUUGAGca -5'
24120 5' -56.2 NC_005263.2 + 21347 0.71 0.358855
Target:  5'- uCGCGaGCGCGCUgaaugaacGUGCGC-AACUCGa -3'
miRNA:   3'- cGCGC-CGCGCGA--------CAUGUGcUUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 6618 0.7 0.385044
Target:  5'- -gGCGGCGCGCUcgGCGCGG--UCGa -3'
miRNA:   3'- cgCGCCGCGCGAcaUGUGCUugAGCa -5'
24120 5' -56.2 NC_005263.2 + 39110 0.7 0.385044
Target:  5'- cGCGCGacucGUGCGCcGUGCGuCGGcGCUCGUg -3'
miRNA:   3'- -CGCGC----CGCGCGaCAUGU-GCU-UGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 26094 0.69 0.441065
Target:  5'- aUGCGGCcgaGCGCguccugGUACGCGccGCUCGa -3'
miRNA:   3'- cGCGCCG---CGCGa-----CAUGUGCu-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 9537 0.69 0.470755
Target:  5'- uGCGCGGCaGCGaccgACGCGGcGCUCGc -3'
miRNA:   3'- -CGCGCCG-CGCgacaUGUGCU-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 13963 0.69 0.450845
Target:  5'- aCGCGGCGCGC-GUuCGCGGGg-CGUg -3'
miRNA:   3'- cGCGCCGCGCGaCAuGUGCUUgaGCA- -5'
24120 5' -56.2 NC_005263.2 + 21197 0.7 0.403192
Target:  5'- cGCGCGGCGCggGCgaguggGUGCGuuuCGAGCgCGUc -3'
miRNA:   3'- -CGCGCCGCG--CGa-----CAUGU---GCUUGaGCA- -5'
24120 5' -56.2 NC_005263.2 + 19749 0.75 0.195
Target:  5'- gGCGCuGGCGCGCUG---GCGGcGCUCGUg -3'
miRNA:   3'- -CGCG-CCGCGCGACaugUGCU-UGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 29058 0.69 0.460743
Target:  5'- cGCGCGGCGCGUccucgGggcgGCGCGca-UCGg -3'
miRNA:   3'- -CGCGCCGCGCGa----Ca---UGUGCuugAGCa -5'
24120 5' -56.2 NC_005263.2 + 6530 0.73 0.253598
Target:  5'- -aGCGGCGCGCauacGCGCGAaaGCUCGc -3'
miRNA:   3'- cgCGCCGCGCGaca-UGUGCU--UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 12113 0.7 0.39405
Target:  5'- cGCaGCGGCGCGCgcgccauUACGCGcGCUCc- -3'
miRNA:   3'- -CG-CGCCGCGCGac-----AUGUGCuUGAGca -5'
24120 5' -56.2 NC_005263.2 + 47372 0.69 0.470755
Target:  5'- uGgGCGGCGCGUucgaUGcGCGCGAGCa--- -3'
miRNA:   3'- -CgCGCCGCGCG----ACaUGUGCUUGagca -5'
24120 5' -56.2 NC_005263.2 + 5919 0.69 0.480875
Target:  5'- gGCGCGGCGUGC-GUACGgaucaGAuAUUCGa -3'
miRNA:   3'- -CGCGCCGCGCGaCAUGUg----CU-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 8854 0.73 0.273804
Target:  5'- -gGCGGCGCGCgggGCGCGAGCccCGc -3'
miRNA:   3'- cgCGCCGCGCGacaUGUGCUUGa-GCa -5'
24120 5' -56.2 NC_005263.2 + 31020 0.7 0.376175
Target:  5'- aGUGCGGCgagGCGCggcGUGCGCu-GCUCGa -3'
miRNA:   3'- -CGCGCCG---CGCGa--CAUGUGcuUGAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.