miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 5' -56.2 NC_005263.2 + 27921 0.69 0.441065
Target:  5'- -gGCGGCGCGUcGcccgGCGCGcuCUCGUc -3'
miRNA:   3'- cgCGCCGCGCGaCa---UGUGCuuGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 46180 0.68 0.522354
Target:  5'- gGUGcCGGCGCGCUcGUgcagACGCGcGGCUgGUa -3'
miRNA:   3'- -CGC-GCCGCGCGA-CA----UGUGC-UUGAgCA- -5'
24120 5' -56.2 NC_005263.2 + 10519 0.68 0.511846
Target:  5'- cGCGuCGGCGaGCUGacGCACGAGCagCGc -3'
miRNA:   3'- -CGC-GCCGCgCGACa-UGUGCUUGa-GCa -5'
24120 5' -56.2 NC_005263.2 + 4961 0.68 0.508711
Target:  5'- aGCGCgacgacugaguuccGGCGCGCUccaGCACGAGCguugCGc -3'
miRNA:   3'- -CGCG--------------CCGCGCGAca-UGUGCUUGa---GCa -5'
24120 5' -56.2 NC_005263.2 + 46117 0.68 0.501426
Target:  5'- cGCGcCGGCGUGacgcuUACGAACUCGc -3'
miRNA:   3'- -CGC-GCCGCGCgacauGUGCUUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 39028 0.68 0.501426
Target:  5'- uGC-CGGuCGCGCUGUucgGCACGGGCg--- -3'
miRNA:   3'- -CGcGCC-GCGCGACA---UGUGCUUGagca -5'
24120 5' -56.2 NC_005263.2 + 15391 0.68 0.491101
Target:  5'- aGCGaccCGGC-CGCcGUGCAUGcGCUCGUg -3'
miRNA:   3'- -CGC---GCCGcGCGaCAUGUGCuUGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 6748 0.69 0.480875
Target:  5'- cGCGCGucacguccaucGCGCGCcGg--GCGAGCUCGg -3'
miRNA:   3'- -CGCGC-----------CGCGCGaCaugUGCUUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 17397 0.69 0.460743
Target:  5'- gGCGCGGcCGCGCgccugGCggGCGGugUCGc -3'
miRNA:   3'- -CGCGCC-GCGCGaca--UG--UGCUugAGCa -5'
24120 5' -56.2 NC_005263.2 + 18924 0.68 0.532945
Target:  5'- aGCGUGacCGCGCg--GCACGAgcGCUCGa -3'
miRNA:   3'- -CGCGCc-GCGCGacaUGUGCU--UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 18770 0.67 0.575994
Target:  5'- gGCGCGGUgcucGCGCUGguuauCGuGCUCGc -3'
miRNA:   3'- -CGCGCCG----CGCGACaugu-GCuUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 24210 0.67 0.575994
Target:  5'- cGCG-GGCGCGCU---CACGAGCgCGc -3'
miRNA:   3'- -CGCgCCGCGCGAcauGUGCUUGaGCa -5'
24120 5' -56.2 NC_005263.2 + 30583 0.66 0.630769
Target:  5'- cCGCuGcGCGCGCUGUacaGCGCGAucagaucaucCUCGg -3'
miRNA:   3'- cGCG-C-CGCGCGACA---UGUGCUu---------GAGCa -5'
24120 5' -56.2 NC_005263.2 + 2668 0.66 0.619774
Target:  5'- gGUGCaGGCGUGCguUGUgguagcugaucGCGCGGccGCUCGg -3'
miRNA:   3'- -CGCG-CCGCGCG--ACA-----------UGUGCU--UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 32095 0.66 0.60879
Target:  5'- cGUGCGGCgGCGUcgGUGCGauCGAGCgcuUCGa -3'
miRNA:   3'- -CGCGCCG-CGCGa-CAUGU--GCUUG---AGCa -5'
24120 5' -56.2 NC_005263.2 + 24700 0.66 0.60879
Target:  5'- -gGCGGCGCGCcgaacGUGC-CGGGCggCGc -3'
miRNA:   3'- cgCGCCGCGCGa----CAUGuGCUUGa-GCa -5'
24120 5' -56.2 NC_005263.2 + 4088 0.67 0.597826
Target:  5'- --aCGGUGCGUUGUGCGCGAcgaauggcgaGC-CGUu -3'
miRNA:   3'- cgcGCCGCGCGACAUGUGCU----------UGaGCA- -5'
24120 5' -56.2 NC_005263.2 + 828 0.67 0.597826
Target:  5'- uGCGCuucGGCGCGCacGUcacuaccgaGCGCGGACagCGUa -3'
miRNA:   3'- -CGCG---CCGCGCGa-CA---------UGUGCUUGa-GCA- -5'
24120 5' -56.2 NC_005263.2 + 17987 0.67 0.597826
Target:  5'- -aGCGGCGUGCaGaacUACGCGAGCg--- -3'
miRNA:   3'- cgCGCCGCGCGaC---AUGUGCUUGagca -5'
24120 5' -56.2 NC_005263.2 + 19396 0.67 0.586891
Target:  5'- -gGCGGCGCGCaGUACggcaACGcGCgCGUu -3'
miRNA:   3'- cgCGCCGCGCGaCAUG----UGCuUGaGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.