miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 5' -56.2 NC_005263.2 + 828 0.67 0.597826
Target:  5'- uGCGCuucGGCGCGCacGUcacuaccgaGCGCGGACagCGUa -3'
miRNA:   3'- -CGCG---CCGCGCGa-CA---------UGUGCUUGa-GCA- -5'
24120 5' -56.2 NC_005263.2 + 2668 0.66 0.619774
Target:  5'- gGUGCaGGCGUGCguUGUgguagcugaucGCGCGGccGCUCGg -3'
miRNA:   3'- -CGCG-CCGCGCG--ACA-----------UGUGCU--UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 3990 0.66 0.663721
Target:  5'- uUGCGGCGUuaaGCUGcUGCGUGAcCUCGa -3'
miRNA:   3'- cGCGCCGCG---CGAC-AUGUGCUuGAGCa -5'
24120 5' -56.2 NC_005263.2 + 4088 0.67 0.597826
Target:  5'- --aCGGUGCGUUGUGCGCGAcgaauggcgaGC-CGUu -3'
miRNA:   3'- cgcGCCGCGCGACAUGUGCU----------UGaGCA- -5'
24120 5' -56.2 NC_005263.2 + 4961 0.68 0.508711
Target:  5'- aGCGCgacgacugaguuccGGCGCGCUccaGCACGAGCguugCGc -3'
miRNA:   3'- -CGCG--------------CCGCGCGAca-UGUGCUUGa---GCa -5'
24120 5' -56.2 NC_005263.2 + 5205 0.72 0.295279
Target:  5'- gGCGCGGCGuCGCUaccGU-CGCGAAUUCc- -3'
miRNA:   3'- -CGCGCCGC-GCGA---CAuGUGCUUGAGca -5'
24120 5' -56.2 NC_005263.2 + 5919 0.69 0.480875
Target:  5'- gGCGCGGCGUGC-GUACGgaucaGAuAUUCGa -3'
miRNA:   3'- -CGCGCCGCGCGaCAUGUg----CU-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 6059 0.69 0.431407
Target:  5'- -gGCGGCGCGCUucACGCGcGC-CGa -3'
miRNA:   3'- cgCGCCGCGCGAcaUGUGCuUGaGCa -5'
24120 5' -56.2 NC_005263.2 + 6530 0.73 0.253598
Target:  5'- -aGCGGCGCGCauacGCGCGAaaGCUCGc -3'
miRNA:   3'- cgCGCCGCGCGaca-UGUGCU--UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 6618 0.7 0.385044
Target:  5'- -gGCGGCGCGCUcgGCGCGG--UCGa -3'
miRNA:   3'- cgCGCCGCGCGAcaUGUGCUugAGCa -5'
24120 5' -56.2 NC_005263.2 + 6748 0.69 0.480875
Target:  5'- cGCGCGucacguccaucGCGCGCcGg--GCGAGCUCGg -3'
miRNA:   3'- -CGCGC-----------CGCGCGaCaugUGCUUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 7227 0.69 0.480875
Target:  5'- gGCGaCGGCGCcauGCgGUGCACGcgaGGCUCu- -3'
miRNA:   3'- -CGC-GCCGCG---CGaCAUGUGC---UUGAGca -5'
24120 5' -56.2 NC_005263.2 + 7977 0.66 0.663721
Target:  5'- aCGCGGCGCcagaGCU--GCACGAG-UCGg -3'
miRNA:   3'- cGCGCCGCG----CGAcaUGUGCUUgAGCa -5'
24120 5' -56.2 NC_005263.2 + 8854 0.73 0.273804
Target:  5'- -gGCGGCGCGCgggGCGCGAGCccCGc -3'
miRNA:   3'- cgCGCCGCGCGacaUGUGCUUGa-GCa -5'
24120 5' -56.2 NC_005263.2 + 9491 0.68 0.511846
Target:  5'- cGCGcCGGCGCuauccaucGC-GUGCGCGGGCugaaUCGUg -3'
miRNA:   3'- -CGC-GCCGCG--------CGaCAUGUGCUUG----AGCA- -5'
24120 5' -56.2 NC_005263.2 + 9537 0.69 0.470755
Target:  5'- uGCGCGGCaGCGaccgACGCGGcGCUCGc -3'
miRNA:   3'- -CGCGCCG-CGCgacaUGUGCU-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 9716 0.66 0.652752
Target:  5'- cGCuGCGGCGCGCU-UGC----GCUCGUu -3'
miRNA:   3'- -CG-CGCCGCGCGAcAUGugcuUGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 9846 0.78 0.125804
Target:  5'- gGCGCGGCGCGCU-UGCuCG-ACUCGg -3'
miRNA:   3'- -CGCGCCGCGCGAcAUGuGCuUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 10519 0.68 0.511846
Target:  5'- cGCGuCGGCGaGCUGacGCACGAGCagCGc -3'
miRNA:   3'- -CGC-GCCGCgCGACa-UGUGCUUGa-GCa -5'
24120 5' -56.2 NC_005263.2 + 12113 0.7 0.39405
Target:  5'- cGCaGCGGCGCGCgcgccauUACGCGcGCUCc- -3'
miRNA:   3'- -CG-CGCCGCGCGac-----AUGUGCuUGAGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.