miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 5' -56.2 NC_005263.2 + 13104 0.67 0.597826
Target:  5'- -aGCGGCGUGUUGaAUugGAAgaauucCUCGg -3'
miRNA:   3'- cgCGCCGCGCGACaUGugCUU------GAGCa -5'
24120 5' -56.2 NC_005263.2 + 13963 0.69 0.450845
Target:  5'- aCGCGGCGCGC-GUuCGCGGGg-CGUg -3'
miRNA:   3'- cGCGCCGCGCGaCAuGUGCUUgaGCA- -5'
24120 5' -56.2 NC_005263.2 + 14108 0.67 0.586891
Target:  5'- uGCGCGGCGguCGCcGU-CGCGA--UCGUa -3'
miRNA:   3'- -CGCGCCGC--GCGaCAuGUGCUugAGCA- -5'
24120 5' -56.2 NC_005263.2 + 14175 0.75 0.184802
Target:  5'- -gGCGGC-CGgUGUGCGCGAGCUgCGUg -3'
miRNA:   3'- cgCGCCGcGCgACAUGUGCUUGA-GCA- -5'
24120 5' -56.2 NC_005263.2 + 15391 0.68 0.491101
Target:  5'- aGCGaccCGGC-CGCcGUGCAUGcGCUCGUg -3'
miRNA:   3'- -CGC---GCCGcGCGaCAUGUGCuUGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 15592 0.67 0.575994
Target:  5'- aGCGCGGC-CG--GUGCACGAGCgauaCGa -3'
miRNA:   3'- -CGCGCCGcGCgaCAUGUGCUUGa---GCa -5'
24120 5' -56.2 NC_005263.2 + 16438 0.72 0.302723
Target:  5'- gGCGCGGCGggccuCGCUG-GCAUGGuACUCGc -3'
miRNA:   3'- -CGCGCCGC-----GCGACaUGUGCU-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 17397 0.69 0.460743
Target:  5'- gGCGCGGcCGCGCgccugGCggGCGGugUCGc -3'
miRNA:   3'- -CGCGCC-GCGCGaca--UG--UGCUugAGCa -5'
24120 5' -56.2 NC_005263.2 + 17763 0.72 0.287978
Target:  5'- aGCGCGGcCGCGCUcgGCACGcgcuuCUCGc -3'
miRNA:   3'- -CGCGCC-GCGCGAcaUGUGCuu---GAGCa -5'
24120 5' -56.2 NC_005263.2 + 17987 0.67 0.597826
Target:  5'- -aGCGGCGUGCaGaacUACGCGAGCg--- -3'
miRNA:   3'- cgCGCCGCGCGaC---AUGUGCUUGagca -5'
24120 5' -56.2 NC_005263.2 + 18770 0.67 0.575994
Target:  5'- gGCGCGGUgcucGCGCUGguuauCGuGCUCGc -3'
miRNA:   3'- -CGCGCCG----CGCGACaugu-GCuUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 18924 0.68 0.532945
Target:  5'- aGCGUGacCGCGCg--GCACGAgcGCUCGa -3'
miRNA:   3'- -CGCGCc-GCGCGacaUGUGCU--UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 19067 0.69 0.435255
Target:  5'- cGCGCGGCcugcgcGCGCUgGUGCGucuugcagggcuggcCGAugUCGa -3'
miRNA:   3'- -CGCGCCG------CGCGA-CAUGU---------------GCUugAGCa -5'
24120 5' -56.2 NC_005263.2 + 19312 0.67 0.565143
Target:  5'- aCGCGGCccGCcgGCUGUGCGgugguCGAugUCGa -3'
miRNA:   3'- cGCGCCG--CG--CGACAUGU-----GCUugAGCa -5'
24120 5' -56.2 NC_005263.2 + 19396 0.67 0.586891
Target:  5'- -gGCGGCGCGCaGUACggcaACGcGCgCGUu -3'
miRNA:   3'- cgCGCCGCGCGaCAUG----UGCuUGaGCA- -5'
24120 5' -56.2 NC_005263.2 + 19749 0.75 0.195
Target:  5'- gGCGCuGGCGCGCUG---GCGGcGCUCGUg -3'
miRNA:   3'- -CGCG-CCGCGCGACaugUGCU-UGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 19850 0.7 0.403192
Target:  5'- cGCuGCaGCGCGUgcagGUGCGCG-ACUCGc -3'
miRNA:   3'- -CG-CGcCGCGCGa---CAUGUGCuUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 20827 0.66 0.619774
Target:  5'- gGCGCGGCucggccucGCGCaGUcgggccaauucgACGCGAGCgUCGc -3'
miRNA:   3'- -CGCGCCG--------CGCGaCA------------UGUGCUUG-AGCa -5'
24120 5' -56.2 NC_005263.2 + 21197 0.7 0.403192
Target:  5'- cGCGCGGCGCggGCgaguggGUGCGuuuCGAGCgCGUc -3'
miRNA:   3'- -CGCGCCGCG--CGa-----CAUGU---GCUUGaGCA- -5'
24120 5' -56.2 NC_005263.2 + 21347 0.71 0.358855
Target:  5'- uCGCGaGCGCGCUgaaugaacGUGCGC-AACUCGa -3'
miRNA:   3'- cGCGC-CGCGCGA--------CAUGUGcUUGAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.