miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24120 5' -56.2 NC_005263.2 + 5919 0.69 0.480875
Target:  5'- gGCGCGGCGUGC-GUACGgaucaGAuAUUCGa -3'
miRNA:   3'- -CGCGCCGCGCGaCAUGUg----CU-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 39110 0.7 0.385044
Target:  5'- cGCGCGacucGUGCGCcGUGCGuCGGcGCUCGUg -3'
miRNA:   3'- -CGCGC----CGCGCGaCAUGU-GCU-UGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 43048 0.66 0.648359
Target:  5'- aCGCGGCGCGacaauggcccgcGUugGCGggUUUGa -3'
miRNA:   3'- cGCGCCGCGCga----------CAugUGCuuGAGCa -5'
24120 5' -56.2 NC_005263.2 + 15592 0.67 0.575994
Target:  5'- aGCGCGGC-CG--GUGCACGAGCgauaCGa -3'
miRNA:   3'- -CGCGCCGcGCgaCAUGUGCUUGa---GCa -5'
24120 5' -56.2 NC_005263.2 + 7227 0.69 0.480875
Target:  5'- gGCGaCGGCGCcauGCgGUGCACGcgaGGCUCu- -3'
miRNA:   3'- -CGC-GCCGCG---CGaCAUGUGC---UUGAGca -5'
24120 5' -56.2 NC_005263.2 + 6618 0.7 0.385044
Target:  5'- -gGCGGCGCGCUcgGCGCGG--UCGa -3'
miRNA:   3'- cgCGCCGCGCGAcaUGUGCUugAGCa -5'
24120 5' -56.2 NC_005263.2 + 19312 0.67 0.565143
Target:  5'- aCGCGGCccGCcgGCUGUGCGgugguCGAugUCGa -3'
miRNA:   3'- cGCGCCG--CG--CGACAUGU-----GCUugAGCa -5'
24120 5' -56.2 NC_005263.2 + 31020 0.7 0.376175
Target:  5'- aGUGCGGCgagGCGCggcGUGCGCu-GCUCGa -3'
miRNA:   3'- -CGCGCCG---CGCGa--CAUGUGcuUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 21347 0.71 0.358855
Target:  5'- uCGCGaGCGCGCUgaaugaacGUGCGC-AACUCGa -3'
miRNA:   3'- cGCGC-CGCGCGA--------CAUGUGcUUGAGCa -5'
24120 5' -56.2 NC_005263.2 + 47372 0.69 0.470755
Target:  5'- uGgGCGGCGCGUucgaUGcGCGCGAGCa--- -3'
miRNA:   3'- -CgCGCCGCGCG----ACaUGUGCUUGagca -5'
24120 5' -56.2 NC_005263.2 + 45857 0.68 0.501426
Target:  5'- cGCGCGGCGCGCUacgGCAag--UUCGa -3'
miRNA:   3'- -CGCGCCGCGCGAca-UGUgcuuGAGCa -5'
24120 5' -56.2 NC_005263.2 + 42895 0.68 0.5213
Target:  5'- cGUGCcGCGCGCUcgccuggacgcgaGUGCGCGAGCa--- -3'
miRNA:   3'- -CGCGcCGCGCGA-------------CAUGUGCUUGagca -5'
24120 5' -56.2 NC_005263.2 + 41687 0.67 0.585799
Target:  5'- gGCGCGGacuGCgGCcGUACGCGGGCaaggagaacauccUCGUa -3'
miRNA:   3'- -CGCGCCg--CG-CGaCAUGUGCUUG-------------AGCA- -5'
24120 5' -56.2 NC_005263.2 + 23892 0.67 0.597826
Target:  5'- aGCGUGaGCGCGCUcGUgaGCGCGcccGCgagCGUg -3'
miRNA:   3'- -CGCGC-CGCGCGA-CA--UGUGCu--UGa--GCA- -5'
24120 5' -56.2 NC_005263.2 + 9716 0.66 0.652752
Target:  5'- cGCuGCGGCGCGCU-UGC----GCUCGUu -3'
miRNA:   3'- -CG-CGCCGCGCGAcAUGugcuUGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 9537 0.69 0.470755
Target:  5'- uGCGCGGCaGCGaccgACGCGGcGCUCGc -3'
miRNA:   3'- -CGCGCCG-CGCgacaUGUGCU-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 12113 0.7 0.39405
Target:  5'- cGCaGCGGCGCGCgcgccauUACGCGcGCUCc- -3'
miRNA:   3'- -CG-CGCCGCGCGac-----AUGUGCuUGAGca -5'
24120 5' -56.2 NC_005263.2 + 30355 0.69 0.444963
Target:  5'- aGCGCGGcCGCGCUGccGCcggcgccgaguGCGAgccccaugcggcggcGCUCGUc -3'
miRNA:   3'- -CGCGCC-GCGCGACa-UG-----------UGCU---------------UGAGCA- -5'
24120 5' -56.2 NC_005263.2 + 16438 0.72 0.302723
Target:  5'- gGCGCGGCGggccuCGCUG-GCAUGGuACUCGc -3'
miRNA:   3'- -CGCGCCGC-----GCGACaUGUGCU-UGAGCa -5'
24120 5' -56.2 NC_005263.2 + 4961 0.68 0.508711
Target:  5'- aGCGCgacgacugaguuccGGCGCGCUccaGCACGAGCguugCGc -3'
miRNA:   3'- -CGCG--------------CCGCGCGAca-UGUGCUUGa---GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.