miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24121 5' -66 NC_005263.2 + 195 0.69 0.131005
Target:  5'- -uGCCCGUGCGcCCGGCCgcuugguugGCaCCGUa- -3'
miRNA:   3'- ucUGGGCGCGC-GGCCGGa--------CG-GGCAgc -5'
24121 5' -66 NC_005263.2 + 792 0.7 0.114886
Target:  5'- cGACCUugaGCGUGCCGGCC-GCCgG-CGc -3'
miRNA:   3'- uCUGGG---CGCGCGGCCGGaCGGgCaGC- -5'
24121 5' -66 NC_005263.2 + 868 0.69 0.141654
Target:  5'- -uACCCGuCGUGCCGGCCgGCgCuUCGu -3'
miRNA:   3'- ucUGGGC-GCGCGGCCGGaCGgGcAGC- -5'
24121 5' -66 NC_005263.2 + 946 0.66 0.233153
Target:  5'- uGGcACCCGCgaGCGgCGacguagcggcggucGCCUGCgCGUCGg -3'
miRNA:   3'- -UC-UGGGCG--CGCgGC--------------CGGACGgGCAGC- -5'
24121 5' -66 NC_005263.2 + 1945 0.66 0.212816
Target:  5'- cGGcACCgGCGaCGCCGGCaa-CCgCGUCGa -3'
miRNA:   3'- -UC-UGGgCGC-GCGGCCGgacGG-GCAGC- -5'
24121 5' -66 NC_005263.2 + 2760 0.67 0.197462
Target:  5'- cGGCCgC-CGUGCCGGUCgUGUUCGUCa -3'
miRNA:   3'- uCUGG-GcGCGCGGCCGG-ACGGGCAGc -5'
24121 5' -66 NC_005263.2 + 2837 0.71 0.097731
Target:  5'- cGACCaccaccguucgaaUGCGgGCCGGCCcGCCCGcCa -3'
miRNA:   3'- uCUGG-------------GCGCgCGGCCGGaCGGGCaGc -5'
24121 5' -66 NC_005263.2 + 3211 0.68 0.165358
Target:  5'- cGGCCCgGCGCGCC-GCCcGCCCc--- -3'
miRNA:   3'- uCUGGG-CGCGCGGcCGGaCGGGcagc -5'
24121 5' -66 NC_005263.2 + 4665 0.7 0.111893
Target:  5'- cAGGCCgGCGCGCgGGUCUuucgucaggaucGUgCCGUCGg -3'
miRNA:   3'- -UCUGGgCGCGCGgCCGGA------------CG-GGCAGC- -5'
24121 5' -66 NC_005263.2 + 6632 0.66 0.240678
Target:  5'- cGACUCGCccGCGUCGagcagcGCCUGCUCGaUCa -3'
miRNA:   3'- uCUGGGCG--CGCGGC------CGGACGGGC-AGc -5'
24121 5' -66 NC_005263.2 + 6762 0.68 0.149188
Target:  5'- ---aUCGCGCGCCGGgCgagcucgGCCuCGUCGa -3'
miRNA:   3'- ucugGGCGCGCGGCCgGa------CGG-GCAGC- -5'
24121 5' -66 NC_005263.2 + 7644 0.67 0.192563
Target:  5'- uGuCCCGCuuaguaggagugGCGUugCGGCCuuUGCCCGUCu -3'
miRNA:   3'- uCuGGGCG------------CGCG--GCCGG--ACGGGCAGc -5'
24121 5' -66 NC_005263.2 + 8804 0.68 0.15309
Target:  5'- cGAUCgCGCGCGCaUGcGCCUGCCgGcCGc -3'
miRNA:   3'- uCUGG-GCGCGCG-GC-CGGACGGgCaGC- -5'
24121 5' -66 NC_005263.2 + 9026 0.66 0.207587
Target:  5'- cGugCCGCGCGaCGGCgaGCCggcuacgaCGUCc -3'
miRNA:   3'- uCugGGCGCGCgGCCGgaCGG--------GCAGc -5'
24121 5' -66 NC_005263.2 + 9197 0.68 0.157085
Target:  5'- cGGCgCgGCGC-CCGGCUUGCUCGUg- -3'
miRNA:   3'- uCUG-GgCGCGcGGCCGGACGGGCAgc -5'
24121 5' -66 NC_005263.2 + 10195 0.66 0.223613
Target:  5'- cAGGCCgaaGCGCucGCCGGCCUcggGCUCGa-- -3'
miRNA:   3'- -UCUGGg--CGCG--CGGCCGGA---CGGGCagc -5'
24121 5' -66 NC_005263.2 + 10356 0.66 0.212816
Target:  5'- --uCCgGC-CGUCGuauGCCUGCCCGUCa -3'
miRNA:   3'- ucuGGgCGcGCGGC---CGGACGGGCAGc -5'
24121 5' -66 NC_005263.2 + 10780 0.69 0.141654
Target:  5'- ---gCUGCGCG-CGGUCUGCuuGUCGa -3'
miRNA:   3'- ucugGGCGCGCgGCCGGACGggCAGC- -5'
24121 5' -66 NC_005263.2 + 11394 0.71 0.094653
Target:  5'- cGGCCUGCGCGCacgugguucgggcgCGGCUccuUGCCCGcgcUCGa -3'
miRNA:   3'- uCUGGGCGCGCG--------------GCCGG---ACGGGC---AGC- -5'
24121 5' -66 NC_005263.2 + 11469 0.66 0.212816
Target:  5'- -aGCUCGCGCuGCCGcGCacuguuaaaCUGCgCCGUCGc -3'
miRNA:   3'- ucUGGGCGCG-CGGC-CG---------GACG-GGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.