miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24121 5' -66 NC_005263.2 + 37713 0.84 0.008694
Target:  5'- cGGACCCGCuCGCCGGCCgGCCCGgcgCGu -3'
miRNA:   3'- -UCUGGGCGcGCGGCCGGaCGGGCa--GC- -5'
24121 5' -66 NC_005263.2 + 9197 0.68 0.157085
Target:  5'- cGGCgCgGCGC-CCGGCUUGCUCGUg- -3'
miRNA:   3'- uCUG-GgCGCGcGGCCGGACGGGCAgc -5'
24121 5' -66 NC_005263.2 + 42023 0.68 0.157085
Target:  5'- cGGCCgGcCGCGCCaaGGCUU-CCUGUCGg -3'
miRNA:   3'- uCUGGgC-GCGCGG--CCGGAcGGGCAGC- -5'
24121 5' -66 NC_005263.2 + 25694 0.66 0.239508
Target:  5'- cGGACacggcgagcacggCgGCGCGUacguucgCGGCCUGCCCGa-- -3'
miRNA:   3'- -UCUG-------------GgCGCGCG-------GCCGGACGGGCagc -5'
24121 5' -66 NC_005263.2 + 11394 0.71 0.094653
Target:  5'- cGGCCUGCGCGCacgugguucgggcgCGGCUccuUGCCCGcgcUCGa -3'
miRNA:   3'- uCUGGGCGCGCG--------------GCCGG---ACGGGC---AGC- -5'
24121 5' -66 NC_005263.2 + 42956 0.71 0.103345
Target:  5'- cGGCCCGUGCGuCCGGgCUGCaCCa--- -3'
miRNA:   3'- uCUGGGCGCGC-GGCCgGACG-GGcagc -5'
24121 5' -66 NC_005263.2 + 4665 0.7 0.111893
Target:  5'- cAGGCCgGCGCGCgGGUCUuucgucaggaucGUgCCGUCGg -3'
miRNA:   3'- -UCUGGgCGCGCGgCCGGA------------CG-GGCAGC- -5'
24121 5' -66 NC_005263.2 + 792 0.7 0.114886
Target:  5'- cGACCUugaGCGUGCCGGCC-GCCgG-CGc -3'
miRNA:   3'- uCUGGG---CGCGCGGCCGGaCGGgCaGC- -5'
24121 5' -66 NC_005263.2 + 195 0.69 0.131005
Target:  5'- -uGCCCGUGCGcCCGGCCgcuugguugGCaCCGUa- -3'
miRNA:   3'- ucUGGGCGCGC-GGCCGGa--------CG-GGCAgc -5'
24121 5' -66 NC_005263.2 + 20723 0.68 0.15309
Target:  5'- -aGCCggucaGCGCGCCGGCCgccGCCgCGcCGc -3'
miRNA:   3'- ucUGGg----CGCGCGGCCGGa--CGG-GCaGC- -5'
24121 5' -66 NC_005263.2 + 11906 0.69 0.145376
Target:  5'- -cGCCUGCGCGCUGGCgU-CCUGUgCGa -3'
miRNA:   3'- ucUGGGCGCGCGGCCGgAcGGGCA-GC- -5'
24121 5' -66 NC_005263.2 + 37913 0.7 0.124321
Target:  5'- gAGGCCgGCGagGCuuCGGCCUGCUCG-CGa -3'
miRNA:   3'- -UCUGGgCGCg-CG--GCCGGACGGGCaGC- -5'
24121 5' -66 NC_005263.2 + 38888 0.72 0.081032
Target:  5'- cGGACacguaCCGCGCGCCGuacgagcGCC-GCCCGUUGc -3'
miRNA:   3'- -UCUG-----GGCGCGCGGC-------CGGaCGGGCAGC- -5'
24121 5' -66 NC_005263.2 + 19160 0.68 0.15309
Target:  5'- uGACCgUGCaucCGCCGGCgCgGCUCGUCGg -3'
miRNA:   3'- uCUGG-GCGc--GCGGCCG-GaCGGGCAGC- -5'
24121 5' -66 NC_005263.2 + 20564 0.71 0.090451
Target:  5'- -cGCUCGUGC-CCGGCCUGCCgGcCGu -3'
miRNA:   3'- ucUGGGCGCGcGGCCGGACGGgCaGC- -5'
24121 5' -66 NC_005263.2 + 17402 0.7 0.117026
Target:  5'- cGACCacuGcCGCuacugcaaagcgaaGCCGGCCUGCCCG-CGc -3'
miRNA:   3'- uCUGGg--C-GCG--------------CGGCCGGACGGGCaGC- -5'
24121 5' -66 NC_005263.2 + 27964 0.68 0.15309
Target:  5'- -uGCCCgGCGCGaCGGCCguaCCGUCGc -3'
miRNA:   3'- ucUGGG-CGCGCgGCCGGacgGGCAGC- -5'
24121 5' -66 NC_005263.2 + 38648 0.68 0.157085
Target:  5'- -aGCCgGgCGCGCCGcuGCCcguggUGCCCGUCu -3'
miRNA:   3'- ucUGGgC-GCGCGGC--CGG-----ACGGGCAGc -5'
24121 5' -66 NC_005263.2 + 26287 0.71 0.092653
Target:  5'- -cGCCCGCGagaauggcuugcuCGCCGGCCagcugcagGCCgGUCGg -3'
miRNA:   3'- ucUGGGCGC-------------GCGGCCGGa-------CGGgCAGC- -5'
24121 5' -66 NC_005263.2 + 12576 0.7 0.106123
Target:  5'- -cGCCCGCGCGCC-GCCggGCgCaGUCGg -3'
miRNA:   3'- ucUGGGCGCGCGGcCGGa-CGgG-CAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.