miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24122 3' -55.2 NC_005263.2 + 907 0.66 0.717998
Target:  5'- aGGAGUguuggucggcaUCGCGuCcucGUAGCGuGCGCCGc -3'
miRNA:   3'- gCCUUA-----------AGCGCuGc--CAUCGC-UGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 1444 0.68 0.609347
Target:  5'- gCGcGAGgcUUCGCGGCGcucGCGGCGCUGc -3'
miRNA:   3'- -GC-CUU--AAGCGCUGCcauCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 1593 0.67 0.674939
Target:  5'- uGGAcgUgccgagcagCGCGGCGGacacuuCGACGCCGa -3'
miRNA:   3'- gCCUuaA---------GCGCUGCCauc---GCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 1936 0.67 0.642184
Target:  5'- -cGAg--CGCGcCGGcaccGGCGACGCCGg -3'
miRNA:   3'- gcCUuaaGCGCuGCCa---UCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 6981 0.66 0.739067
Target:  5'- cCGGAucUCGCGGCGaaGUucGGCGAugaCGUCGu -3'
miRNA:   3'- -GCCUuaAGCGCUGC--CA--UCGCU---GCGGC- -5'
24122 3' -55.2 NC_005263.2 + 8260 0.66 0.695514
Target:  5'- cCGGGuaugcgcGUUCG-GACGGccacagcgcgAGCGGCGUCGg -3'
miRNA:   3'- -GCCU-------UAAGCgCUGCCa---------UCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 9347 0.67 0.68579
Target:  5'- gCGGA--UCGUauCGGUgaaGGCGAgCGCCGg -3'
miRNA:   3'- -GCCUuaAGCGcuGCCA---UCGCU-GCGGC- -5'
24122 3' -55.2 NC_005263.2 + 11281 0.66 0.70626
Target:  5'- cCGGAAUgaucgugCGCGACGaGcAGCGGCaauuuauggccucGCCa -3'
miRNA:   3'- -GCCUUAa------GCGCUGC-CaUCGCUG-------------CGGc -5'
24122 3' -55.2 NC_005263.2 + 12004 0.66 0.696592
Target:  5'- aCGGGccagcucgUCGUaucgGACGGUAGCGuaACGaCCGg -3'
miRNA:   3'- -GCCUua------AGCG----CUGCCAUCGC--UGC-GGC- -5'
24122 3' -55.2 NC_005263.2 + 12545 0.8 0.116763
Target:  5'- ---cGUUCGCGGCGGccGGCGGCGCCGu -3'
miRNA:   3'- gccuUAAGCGCUGCCa-UCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 16763 0.67 0.664046
Target:  5'- uGGAGUcgCGCcuGACGGccgccGGCGuauCGCCGg -3'
miRNA:   3'- gCCUUAa-GCG--CUGCCa----UCGCu--GCGGC- -5'
24122 3' -55.2 NC_005263.2 + 18515 0.68 0.608254
Target:  5'- cCGGA--UCGCGAUGGacGCGaucaaagcggcucGCGCCGc -3'
miRNA:   3'- -GCCUuaAGCGCUGCCauCGC-------------UGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 18618 0.79 0.141808
Target:  5'- gCGGcGUUCGCGGCaGGUGGCaacccgGGCGCCGc -3'
miRNA:   3'- -GCCuUAAGCGCUG-CCAUCG------CUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 20049 0.66 0.72858
Target:  5'- uGGA--UCGCGGCGGUcguucAGCacACGCuCGa -3'
miRNA:   3'- gCCUuaAGCGCUGCCA-----UCGc-UGCG-GC- -5'
24122 3' -55.2 NC_005263.2 + 20131 0.73 0.35175
Target:  5'- aCGGcaagCGCGACGGUacGGCcgucGCGCCGg -3'
miRNA:   3'- -GCCuuaaGCGCUGCCA--UCGc---UGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 21857 0.68 0.576683
Target:  5'- aGGucgccgcGUUCGCGACGGccGGCaaGACGCUa -3'
miRNA:   3'- gCCu------UAAGCGCUGCCa-UCG--CUGCGGc -5'
24122 3' -55.2 NC_005263.2 + 22221 0.68 0.598427
Target:  5'- gCGGccgUCGcCGGCgucggcccGGUuGCGACGCCGa -3'
miRNA:   3'- -GCCuuaAGC-GCUG--------CCAuCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 24535 0.66 0.707331
Target:  5'- uCGGGcaacgGCGGCGGcgcgGGCGGCGgCGg -3'
miRNA:   3'- -GCCUuaag-CGCUGCCa---UCGCUGCgGC- -5'
24122 3' -55.2 NC_005263.2 + 24598 0.74 0.304119
Target:  5'- uCGGg---CGCaGGCGGUGGCGGCGCa- -3'
miRNA:   3'- -GCCuuaaGCG-CUGCCAUCGCUGCGgc -5'
24122 3' -55.2 NC_005263.2 + 25006 0.66 0.739067
Target:  5'- cCGGGuaUgGCuGCGGUGGCgGugGCUGc -3'
miRNA:   3'- -GCCUuaAgCGcUGCCAUCG-CugCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.