miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24122 3' -55.2 NC_005263.2 + 12545 0.8 0.116763
Target:  5'- ---cGUUCGCGGCGGccGGCGGCGCCGu -3'
miRNA:   3'- gccuUAAGCGCUGCCa-UCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 907 0.66 0.717998
Target:  5'- aGGAGUguuggucggcaUCGCGuCcucGUAGCGuGCGCCGc -3'
miRNA:   3'- gCCUUA-----------AGCGCuGc--CAUCGC-UGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 40058 0.67 0.674939
Target:  5'- aCGGAAcucgCGCGGCGccacGgcGCGgACGCCu -3'
miRNA:   3'- -GCCUUaa--GCGCUGC----CauCGC-UGCGGc -5'
24122 3' -55.2 NC_005263.2 + 1936 0.67 0.642184
Target:  5'- -cGAg--CGCGcCGGcaccGGCGACGCCGg -3'
miRNA:   3'- gcCUuaaGCGCuGCCa---UCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 45332 0.68 0.576683
Target:  5'- cCGG---UCGCGA-GGUcGUGAUGCCGg -3'
miRNA:   3'- -GCCuuaAGCGCUgCCAuCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 31614 0.7 0.471817
Target:  5'- cCGG---UCGCGACGGccgcgcGGCGcaGCGCCGu -3'
miRNA:   3'- -GCCuuaAGCGCUGCCa-----UCGC--UGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 41358 0.66 0.739067
Target:  5'- cCGGcg--CGCGAUGGacGUGACGCgCGa -3'
miRNA:   3'- -GCCuuaaGCGCUGCCauCGCUGCG-GC- -5'
24122 3' -55.2 NC_005263.2 + 45699 0.66 0.72858
Target:  5'- gCGGAugugUCGCGGCGa-AGCGugGUg- -3'
miRNA:   3'- -GCCUua--AGCGCUGCcaUCGCugCGgc -5'
24122 3' -55.2 NC_005263.2 + 11281 0.66 0.70626
Target:  5'- cCGGAAUgaucgugCGCGACGaGcAGCGGCaauuuauggccucGCCa -3'
miRNA:   3'- -GCCUUAa------GCGCUGC-CaUCGCUG-------------CGGc -5'
24122 3' -55.2 NC_005263.2 + 44544 0.68 0.609347
Target:  5'- aGGAGUacgcCGCGACGcuUGGCGAggacauggacgaCGCCGg -3'
miRNA:   3'- gCCUUAa---GCGCUGCc-AUCGCU------------GCGGC- -5'
24122 3' -55.2 NC_005263.2 + 18618 0.79 0.141808
Target:  5'- gCGGcGUUCGCGGCaGGUGGCaacccgGGCGCCGc -3'
miRNA:   3'- -GCCuUAAGCGCUG-CCAUCG------CUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 33968 0.66 0.739067
Target:  5'- gGcGAGUgUGCGGCGaaucGUAGCGGCgagGCCGg -3'
miRNA:   3'- gC-CUUAaGCGCUGC----CAUCGCUG---CGGC- -5'
24122 3' -55.2 NC_005263.2 + 32662 0.71 0.413689
Target:  5'- cCGGAuggCGCGGguCGGcGGCGAUGUCGa -3'
miRNA:   3'- -GCCUuaaGCGCU--GCCaUCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 30173 0.67 0.68579
Target:  5'- gCGGGucGUUCGCuacGACGGUcaCGGgGCCGu -3'
miRNA:   3'- -GCCU--UAAGCG---CUGCCAucGCUgCGGC- -5'
24122 3' -55.2 NC_005263.2 + 6981 0.66 0.739067
Target:  5'- cCGGAucUCGCGGCGaaGUucGGCGAugaCGUCGu -3'
miRNA:   3'- -GCCUuaAGCGCUGC--CA--UCGCU---GCGGC- -5'
24122 3' -55.2 NC_005263.2 + 30803 0.71 0.451966
Target:  5'- -cGAAUUCGCGcGCcGUGGCGACuGCCu -3'
miRNA:   3'- gcCUUAAGCGC-UGcCAUCGCUG-CGGc -5'
24122 3' -55.2 NC_005263.2 + 26610 0.66 0.725415
Target:  5'- uGGGA-UCGagcgguaauCGACGGUgcgccggauuugccAGUGGCGCCGc -3'
miRNA:   3'- gCCUUaAGC---------GCUGCCA--------------UCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 29352 0.68 0.620285
Target:  5'- cCGGGug-CGCGAgcaggcgcCGGUAaccCGGCGCCGa -3'
miRNA:   3'- -GCCUuaaGCGCU--------GCCAUc--GCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 45248 0.68 0.620285
Target:  5'- aCGucGUUCGCGaACGcu-GCGACGCUGa -3'
miRNA:   3'- -GCcuUAAGCGC-UGCcauCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 43605 0.67 0.637805
Target:  5'- gCGGAAgUCGCGAUGGgccagaucggccaAGCGAUGaaGg -3'
miRNA:   3'- -GCCUUaAGCGCUGCCa------------UCGCUGCggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.