miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24122 3' -55.2 NC_005263.2 + 24535 0.66 0.707331
Target:  5'- uCGGGcaacgGCGGCGGcgcgGGCGGCGgCGg -3'
miRNA:   3'- -GCCUuaag-CGCUGCCa---UCGCUGCgGC- -5'
24122 3' -55.2 NC_005263.2 + 25443 0.71 0.451966
Target:  5'- gCGGggUUCGuCGGuuuucUGGUAGCGAagcuaUGCCa -3'
miRNA:   3'- -GCCuuAAGC-GCU-----GCCAUCGCU-----GCGGc -5'
24122 3' -55.2 NC_005263.2 + 41154 0.69 0.544424
Target:  5'- cCGGcGUUCGCG-CGGcgugGGCGGcCGUCGu -3'
miRNA:   3'- -GCCuUAAGCGCuGCCa---UCGCU-GCGGC- -5'
24122 3' -55.2 NC_005263.2 + 20049 0.66 0.72858
Target:  5'- uGGA--UCGCGGCGGUcguucAGCacACGCuCGa -3'
miRNA:   3'- gCCUuaAGCGCUGCCA-----UCGc-UGCG-GC- -5'
24122 3' -55.2 NC_005263.2 + 44887 0.66 0.707331
Target:  5'- cCGGcGUcaUCGgGGCGGgcGGCGGCcggGCCGg -3'
miRNA:   3'- -GCCuUA--AGCgCUGCCa-UCGCUG---CGGC- -5'
24122 3' -55.2 NC_005263.2 + 12004 0.66 0.696592
Target:  5'- aCGGGccagcucgUCGUaucgGACGGUAGCGuaACGaCCGg -3'
miRNA:   3'- -GCCUua------AGCG----CUGCCAUCGC--UGC-GGC- -5'
24122 3' -55.2 NC_005263.2 + 8260 0.66 0.695514
Target:  5'- cCGGGuaugcgcGUUCG-GACGGccacagcgcgAGCGGCGUCGg -3'
miRNA:   3'- -GCCU-------UAAGCgCUGCCa---------UCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 25078 0.67 0.68579
Target:  5'- cCGGcAAUUCGgGugGcGcUGGC-ACGCCGg -3'
miRNA:   3'- -GCC-UUAAGCgCugC-C-AUCGcUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 9347 0.67 0.68579
Target:  5'- gCGGA--UCGUauCGGUgaaGGCGAgCGCCGg -3'
miRNA:   3'- -GCCUuaAGCGcuGCCA---UCGCU-GCGGC- -5'
24122 3' -55.2 NC_005263.2 + 1593 0.67 0.674939
Target:  5'- uGGAcgUgccgagcagCGCGGCGGacacuuCGACGCCGa -3'
miRNA:   3'- gCCUuaA---------GCGCUGCCauc---GCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 16763 0.67 0.664046
Target:  5'- uGGAGUcgCGCcuGACGGccgccGGCGuauCGCCGg -3'
miRNA:   3'- gCCUUAa-GCG--CUGCCa----UCGCu--GCGGC- -5'
24122 3' -55.2 NC_005263.2 + 43605 0.67 0.637805
Target:  5'- gCGGAAgUCGCGAUGGgccagaucggccaAGCGAUGaaGg -3'
miRNA:   3'- -GCCUUaAGCGCUGCCa------------UCGCUGCggC- -5'
24122 3' -55.2 NC_005263.2 + 45248 0.68 0.620285
Target:  5'- aCGucGUUCGCGaACGcu-GCGACGCUGa -3'
miRNA:   3'- -GCcuUAAGCGC-UGCcauCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 29352 0.68 0.620285
Target:  5'- cCGGGug-CGCGAgcaggcgcCGGUAaccCGGCGCCGa -3'
miRNA:   3'- -GCCUuaaGCGCU--------GCCAUc--GCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 1444 0.68 0.609347
Target:  5'- gCGcGAGgcUUCGCGGCGcucGCGGCGCUGc -3'
miRNA:   3'- -GC-CUU--AAGCGCUGCcauCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 18515 0.68 0.608254
Target:  5'- cCGGA--UCGCGAUGGacGCGaucaaagcggcucGCGCCGc -3'
miRNA:   3'- -GCCUuaAGCGCUGCCauCGC-------------UGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 22221 0.68 0.598427
Target:  5'- gCGGccgUCGcCGGCgucggcccGGUuGCGACGCCGa -3'
miRNA:   3'- -GCCuuaAGC-GCUG--------CCAuCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 31248 0.68 0.587537
Target:  5'- uCGGuuc-CGCG-CGGc-GCGGCGCCGg -3'
miRNA:   3'- -GCCuuaaGCGCuGCCauCGCUGCGGC- -5'
24122 3' -55.2 NC_005263.2 + 21857 0.68 0.576683
Target:  5'- aGGucgccgcGUUCGCGACGGccGGCaaGACGCUa -3'
miRNA:   3'- gCCu------UAAGCGCUGCCa-UCG--CUGCGGc -5'
24122 3' -55.2 NC_005263.2 + 28104 0.69 0.565875
Target:  5'- gCGGccGAUcgcgUCGuUGACGGcAGUGGCGCCGu -3'
miRNA:   3'- -GCC--UUA----AGC-GCUGCCaUCGCUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.